View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9109_low_13 (Length: 251)
Name: NF9109_low_13
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9109_low_13 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 13 - 251
Target Start/End: Complemental strand, 44379921 - 44379683
Alignment:
| Q |
13 |
cagagacagataagagttgtttttgaagagggttttgaagattcatgtgattgtgtttctgaatgttagtttcaatggacactaatggaagattagttgc |
112 |
Q |
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| T |
44379921 |
cagagacagataagagttgtttttgaagagggttttgaagattcatgtgattgtgtttctgaatgttagtttcaatggacactaatggaagattagttgc |
44379822 |
T |
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| Q |
113 |
aggatcacataacaggaatgagtttgttcttatcaatgctgatgacactgcaagagtgagtgtaattccattttctttatctcaaacttgtttcttgttt |
212 |
Q |
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| T |
44379821 |
aggatcacataacaggaatgagtttgttcttatcaatgctgatgacactgcaagagtgagtgtaattccattttctttatctcaaacttgtttcttgttt |
44379722 |
T |
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| Q |
213 |
aatacttgctctcttaattgctgtgaagaatttgtagct |
251 |
Q |
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| T |
44379721 |
aatacttgctctcttaattgctgtgaagaatttgtagct |
44379683 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 131
Target Start/End: Complemental strand, 28846937 - 28846887
Alignment:
| Q |
81 |
gtttcaatggacactaatggaagattagttgcaggatcacataacaggaat |
131 |
Q |
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| T |
28846937 |
gtttcaatggacactaatgggagactaattgcagggtcacataacatgaat |
28846887 |
T |
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