View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9109_low_17 (Length: 240)
Name: NF9109_low_17
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9109_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 13053414 - 13053348
Alignment:
| Q |
17 |
acatcattcattaaaacaattatctaaataagattttaatatcagagagcatttgttgggcagataa |
83 |
Q |
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| T |
13053414 |
acatcattcattaaaacaattatctaaataagattttaatatcagagagcatttgttgggcagataa |
13053348 |
T |
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Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 176 - 226
Target Start/End: Complemental strand, 13053254 - 13053204
Alignment:
| Q |
176 |
ccccataaataaatgccaaagtagaaaactcatcctgtttatgaatttcag |
226 |
Q |
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|||||||||||||||||||| ||||||||||||||| |||||||||||||| |
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| T |
13053254 |
ccccataaataaatgccaaaatagaaaactcatcctatttatgaatttcag |
13053204 |
T |
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