View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9109_low_2 (Length: 642)

Name: NF9109_low_2
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9109_low_2
NF9109_low_2
[»] chr3 (11 HSPs)
chr3 (325-629)||(48802238-48802542)
chr3 (1-186)||(48802693-48802878)
chr3 (198-244)||(6437982-6438028)
chr3 (196-254)||(11054443-11054500)
chr3 (196-254)||(23311728-23311785)
chr3 (196-254)||(36546474-36546531)
chr3 (196-254)||(36561784-36561841)
chr3 (201-254)||(48802618-48802674)
chr3 (196-254)||(23910630-23910687)
chr3 (198-246)||(14752382-14752429)
chr3 (198-246)||(28875309-28875356)
[»] chr8 (8 HSPs)
chr8 (196-254)||(41086563-41086621)
chr8 (196-254)||(7022580-7022637)
chr8 (196-254)||(7858454-7858511)
chr8 (198-244)||(13143661-13143706)
chr8 (197-254)||(26483460-26483515)
chr8 (198-246)||(8107834-8107882)
chr8 (200-228)||(28348511-28348539)
chr8 (198-246)||(34890390-34890437)
[»] chr7 (15 HSPs)
chr7 (196-252)||(35923180-35923235)
chr7 (196-254)||(18102457-18102514)
chr7 (196-254)||(25737802-25737859)
chr7 (196-254)||(47557922-47557979)
chr7 (199-254)||(39174181-39174235)
chr7 (105-167)||(5276149-5276214)
chr7 (198-228)||(6190944-6190974)
chr7 (196-254)||(14805798-14805855)
chr7 (196-254)||(15252792-15252849)
chr7 (199-244)||(44877792-44877835)
chr7 (199-252)||(46760435-46760487)
chr7 (196-228)||(4910864-4910896)
chr7 (196-228)||(16562676-16562708)
chr7 (196-228)||(16602954-16602986)
chr7 (198-246)||(25944475-25944522)
[»] scaffold0045 (1 HSPs)
scaffold0045 (196-254)||(77885-77942)
[»] chr5 (9 HSPs)
chr5 (196-254)||(842742-842799)
chr5 (196-254)||(6686311-6686368)
chr5 (80-150)||(7096182-7096255)
chr5 (196-254)||(11262060-11262117)
chr5 (196-254)||(43590138-43590195)
chr5 (196-229)||(25840760-25840793)
chr5 (198-246)||(9957631-9957678)
chr5 (196-248)||(37522772-37522823)
chr5 (196-248)||(37562944-37562995)
[»] chr4 (7 HSPs)
chr4 (197-254)||(41414778-41414834)
chr4 (197-254)||(47867806-47867862)
chr4 (196-254)||(14332685-14332742)
chr4 (196-254)||(26916251-26916308)
chr4 (196-248)||(2229173-2229224)
chr4 (196-254)||(28669169-28669226)
chr4 (196-228)||(30012131-30012163)
[»] chr1 (10 HSPs)
chr1 (197-254)||(35691320-35691376)
chr1 (196-254)||(12449143-12449200)
chr1 (196-254)||(32624182-32624239)
chr1 (196-254)||(39555762-39555819)
chr1 (196-254)||(43667476-43667533)
chr1 (81-161)||(28077103-28077186)
chr1 (196-254)||(24190399-24190455)
chr1 (196-249)||(2125965-2126017)
chr1 (198-244)||(16854034-16854082)
chr1 (198-243)||(24728845-24728889)
[»] scaffold0018 (1 HSPs)
scaffold0018 (199-254)||(154792-154846)
[»] chr6 (5 HSPs)
chr6 (196-254)||(3095897-3095954)
chr6 (196-248)||(21542346-21542397)
chr6 (197-254)||(11082422-11082477)
chr6 (196-254)||(34177817-34177874)
chr6 (196-254)||(35129231-35129288)
[»] chr2 (10 HSPs)
chr2 (196-254)||(6110376-6110433)
chr2 (196-254)||(41528184-41528241)
chr2 (199-248)||(45085188-45085236)
chr2 (198-244)||(14873859-14873905)
chr2 (196-254)||(28599324-28599381)
chr2 (196-254)||(35517050-35517107)
chr2 (198-244)||(45660261-45660306)
chr2 (198-243)||(25571943-25571987)
chr2 (196-228)||(18834123-18834155)
chr2 (198-246)||(19263998-19264045)
[»] scaffold0774 (1 HSPs)
scaffold0774 (202-248)||(3610-3655)
[»] scaffold0300 (1 HSPs)
scaffold0300 (196-254)||(749-806)


Alignment Details
Target: chr3 (Bit Score: 281; Significance: 1e-157; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 325 - 629
Target Start/End: Complemental strand, 48802542 - 48802238
Alignment:
Q  325 gacgaatagataaaaatttgtgatataagcgcttaattaaattgattggatccaaacaagaatacttgatgtgagattcaaattggttttatcttgatag 424  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  48802542 gacgaatagataaaaatttgtgatataagcgcttaattaaattgtttggatccaaacaagactacttgatgtgagattcaaattggttttatcttgatag 48802443  T
Q  425 atctttgttatttcctccgaatcagtccatgcatcacatgttttgattctaagtgtagggttgttttgacttttgagagtttcatattgactagagatat 524  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  48802442 atctttgttatttcctccgaatcagtccatgcatcacatgttttgattctaagtgttgggttgttttgacttttgagagtttcatattgactagagatat 48802343  T
Q  525 gacttagatagtgcttgtaaggtttgagcagtccggatcctacaagtcattttgtaggattttgtcacaatcaatgtcagaattctaagatttgaagttc 624  Q
    |||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  48802342 gacttagatagtgcttgttaggtttgagcagtccggatccaacaagtcattttgtaggattttgtcacactcaatgtcagaattctaagatttgaagttc 48802243  T
Q  625 tgatg 629  Q
    |||||    
T  48802242 tgatg 48802238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 182; E-Value: 4e-98
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 48802878 - 48802693
Alignment:
Q  1 gaggttagtattcaaatgttgctcttcaccaagcaaatgacattctgtgagagtttatagaaacaagttatgccatgtgcataagctctcttaaatagct 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48802878 gaggttagtattcaaatgttgctcttcaccaagcaaatgacattctgtgagagtttatagaaacaagttatgccatgtgcataagctctcttaaatagct 48802779  T
Q  101 tataaaaacggtttgactttatttatctttttataaaaatagcttatacaattgcacttatacgatactccctccgtcccataata 186  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  48802778 tataaaaacggtttgactttatttatctttttataaagatagcttatacaattgcacttatacgatactccctccgtcccataata 48802693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 6437982 - 6438028
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatc 244  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  6437982 cattttctttgtcccaaaatataagcaaaaaaaaacaaacttttatc 6438028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 11054500 - 11054443
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  11054500 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 11054443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 23311785 - 23311728
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| |   |||||||||||||||||||||    
T  23311785 cacattttctttgtcccaaaatataagcaaaaa-agtcaaacttttatctttttcaaga 23311728  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 36546474 - 36546531
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||| ||||||||||||    
T  36546474 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttgtctttttcaaga 36546531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 36561841 - 36561784
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||| ||||||||||||    
T  36561841 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttgtctttttcaaga 36561784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 201 - 254
Target Start/End: Complemental strand, 48802674 - 48802618
Alignment:
Q  201 tttctttgtcccaaaatataagaa---aaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||   |||| ||| |||||||||||||||||||||    
T  48802674 tttctttgtcccaaaatataagaagaaaaaaaaaacaaacttttatctttttcaaga 48802618  T

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Target: chr3; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 23910687 - 23910630
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||| |||||||||||||||||| ||||| | | ||| |||||||||||||||||    
T  23910687 cacattttttttgtcccaaaatataagcaaaaa-agacaaatttttatctttttcaaga 23910630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 14752429 - 14752382
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatctt 246  Q
    ||||||||||||||||||||||||| ||||| | | |||||||||||||    
T  14752429 cattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctt 14752382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 28875309 - 28875356
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatctt 246  Q
    ||||||| ||||||||||||||||| ||||| | |||||||||||||||    
T  28875309 cattttcattgtcccaaaatataagcaaaaa-atataaacttttatctt 28875356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 41086621 - 41086563
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  41086621 cacattttctttgtcccaaaatataagcaaaaaaagacaaacttttatctttttcaaga 41086563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 7022637 - 7022580
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  7022637 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctttttcaaga 7022580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 7858454 - 7858511
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  7858454 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 7858511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 13143661 - 13143706
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatc 244  Q
    ||||||||||||||||||||||||| ||||| | |||||||||||||    
T  13143661 cattttctttgtcccaaaatataagcaaaaa-agataaacttttatc 13143706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 26483460 - 26483515
Alignment:
Q  197 acattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||| |||||||||||||||||  | | |||||||||| ||||||||||    
T  26483460 acattttctttgtaccaaaatataagaaaaa--acacaaacttttatttttttcaaga 26483515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 8107882 - 8107834
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatctt 246  Q
    ||||||||||||||||||||||||| ||||| | | ||| |||||||||    
T  8107882 cattttctttgtcccaaaatataagcaaaaaaagacaaatttttatctt 8107834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 200 - 228
Target Start/End: Original strand, 28348511 - 28348539
Alignment:
Q  200 ttttctttgtcccaaaatataagaaaaaa 228  Q
    |||||||||||||||||||||||||||||    
T  28348511 ttttctttgtcccaaaatataagaaaaaa 28348539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 34890437 - 34890390
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatctt 246  Q
    ||||||||||||||||||||||||| ||||| | | |||||||||||||    
T  34890437 cattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctt 34890390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 196 - 252
Target Start/End: Original strand, 35923180 - 35923235
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaa 252  Q
    |||||||||||||||||||||||||| |||||| | |||||||||||||||||||||    
T  35923180 cacattttctttgtcccaaaatataataaaaaa-agataaacttttatctttttcaa 35923235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 18102457 - 18102514
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  18102457 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctttttcaaga 18102514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 25737859 - 25737802
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| ||| ||||||||||||||| |||||    
T  25737859 cacattttctttgtcccaaaatataagcaaaaa-aaaaaaacttttatcttttccaaga 25737802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 47557979 - 47557922
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||||| ||||||||||    
T  47557979 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatgtttttcaaga 47557922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 39174181 - 39174235
Alignment:
Q  199 attttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||| |||||||||||| ||||| | | |||||||||||||||||||||    
T  39174181 attttctttgttccaaaatataagtaaaaa-agacaaacttttatctttttcaaga 39174235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 105 - 167
Target Start/End: Complemental strand, 5276214 - 5276149
Alignment:
Q  105 aaaacggtttgactttat-ttatctttt--tataaaaatagcttatacaattgcacttatacgata 167  Q
    |||||||||||||||||| |||||||||  |||||||||||||||||||   ||||||| ||||||    
T  5276214 aaaacggtttgactttatgttatcttttgttataaaaatagcttatacataagcacttaaacgata 5276149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 228
Target Start/End: Original strand, 6190944 - 6190974
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaa 228  Q
    |||||||||||||||||||||||||||||||    
T  6190944 cattttctttgtcccaaaatataagaaaaaa 6190974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 14805798 - 14805855
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||||||||||||||||  |||| | | ||||||||||||||| |||||    
T  14805798 cacattttctttgtcccaaaatataag-caaaacagacaaacttttatcttttccaaga 14805855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 15252792 - 15252849
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||||||||||||||||  |||| | | ||||||||||||||| |||||    
T  15252792 cacattttctttgtcccaaaatataag-caaaacagacaaacttttatcttttccaaga 15252849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 199 - 244
Target Start/End: Original strand, 44877792 - 44877835
Alignment:
Q  199 attttctttgtcccaaaatataagaaaaaataaataaacttttatc 244  Q
    |||||||||||||||||||||||||||||  || ||||||||||||    
T  44877792 attttctttgtcccaaaatataagaaaaa--aattaaacttttatc 44877835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 252
Target Start/End: Complemental strand, 46760487 - 46760435
Alignment:
Q  199 attttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaa 252  Q
    |||||||||||||||||||||||| ||||| | | |||||||||| ||||||||    
T  46760487 attttctttgtcccaaaatataagtaaaaa-agacaaacttttatttttttcaa 46760435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 4910896 - 4910864
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaa 228  Q
    ||||||||||||||||||||||||||| |||||    
T  4910896 cacattttctttgtcccaaaatataagcaaaaa 4910864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 228
Target Start/End: Original strand, 16562676 - 16562708
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaa 228  Q
    ||||||||||||||||||||||||||| |||||    
T  16562676 cacattttctttgtcccaaaatataagtaaaaa 16562708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 16602986 - 16602954
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaa 228  Q
    ||||||||||||||||||||||||||| |||||    
T  16602986 cacattttctttgtcccaaaatataagtaaaaa 16602954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 25944475 - 25944522
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatctt 246  Q
    ||||||||||||||||||||||||| ||||| | | |||||||||||||    
T  25944475 cattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctt 25944522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 77885 - 77942
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  77885 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctttttcaaga 77942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 39; Significance: 0.000000000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 842799 - 842742
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | ||||||||||||||||| |||||    
T  842799 cacattttctttgtcccaaaatataagcaaaaa-agataaacttttatcttttccaaga 842742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 6686311 - 6686368
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||||||||||||||| | |||| | ||||||||||||||||| |||||    
T  6686311 cacattttctttgtcccaaaatataa-acaaaaaagataaacttttatcttttccaaga 6686368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 80 - 150
Target Start/End: Original strand, 7096182 - 7096255
Alignment:
Q  80 cataagctctcttaaatagcttataaaaacggtttgacttta-tttatcttt--ttataaaaatagcttataca 150  Q
    ||||||||||||  |||||||||| |||| |||||||||||| |||||||||  ||||| ||||||||||||||    
T  7096182 cataagctctctataatagcttatgaaaatggtttgactttattttatcttttgttatagaaatagcttataca 7096255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 11262117 - 11262060
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  11262117 cacattttctttgtcccaaaatataagtaaaaa-agacaaacttttatcttttccaaga 11262060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 43590195 - 43590138
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||| |||||||||||| ||||| | | |||||||||||||||||||||    
T  43590195 cacattttctttgtaccaaaatataagcaaaaa-atacaaacttttatctttttcaaga 43590138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 229
Target Start/End: Original strand, 25840760 - 25840793
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaat 229  Q
    ||||||||||||||||||||||||||| ||||||    
T  25840760 cacattttctttgtcccaaaatataagcaaaaat 25840793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 246
Target Start/End: Complemental strand, 9957678 - 9957631
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatctt 246  Q
    ||||||||||||||||||||||||| ||||| | | |||||||||||||    
T  9957678 cattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctt 9957631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 37522823 - 37522772
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttt 248  Q
    ||||||||||| ||||||||||||||| ||||| | | |||||||||||||||    
T  37522823 cacattttcttcgtcccaaaatataagcaaaaa-agacaaacttttatctttt 37522772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 248
Target Start/End: Complemental strand, 37562995 - 37562944
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttt 248  Q
    ||||||||||| ||||||||||||||| ||||| | | |||||||||||||||    
T  37562995 cacattttcttcgtcccaaaatataagcaaaaa-agacaaacttttatctttt 37562944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 41414834 - 41414778
Alignment:
Q  197 acattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  41414834 acattttctttgtcccaaaatataagtaaaaa-agacaaacttttatctttttcaaga 41414778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 47867806 - 47867862
Alignment:
Q  197 acattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  47867806 acattttctttgtcccaaaatataagcaaaaa-agaaaaacttttatctttttcaaga 47867862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 14332685 - 14332742
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  14332685 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 14332742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 26916251 - 26916308
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||| ||||||||||| ||||| | ||||||||||||| |||||||||    
T  26916251 cacattttctttgtctcaaaatataagcaaaaa-agataaacttttatccttttcaaga 26916308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 2229173 - 2229224
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttt 248  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||||||||||    
T  2229173 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctttt 2229224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 28669226 - 28669169
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| |||||   | ||| |||||||||||||||||    
T  28669226 cacattttctttgtcccaaaatataagcaaaaa-ggacaaatttttatctttttcaaga 28669169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 30012163 - 30012131
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaa 228  Q
    ||||||||||||||||||||||||||| |||||    
T  30012163 cacattttctttgtcccaaaatataagcaaaaa 30012131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 197 - 254
Target Start/End: Original strand, 35691320 - 35691376
Alignment:
Q  197 acattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||| |||||||||||| ||||| ||||||| |||||||||||||||||    
T  35691320 acattttctttgtaccaaaatataagtaaaaa-aaataaatttttatctttttcaaga 35691376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 12449200 - 12449143
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  12449200 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 12449143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 32624239 - 32624182
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  32624239 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 32624182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 39555819 - 39555762
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  39555819 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 39555762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 43667533 - 43667476
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||| ||||||||||| ||||| | | |||||||||||||||||||||    
T  43667533 cacattttctttgtctcaaaatataagcaaaaa-agacaaacttttatctttttcaaga 43667476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 81 - 161
Target Start/End: Original strand, 28077103 - 28077186
Alignment:
Q  81 ataagctctcttaaatagcttataaaaacggtttgacttt-atttatcttt--ttataaaaatagcttatacaattgcacttat 161  Q
    ||||||||||| ||||||||||| ||||| |||||| |||  |||||||||  ||||| ||||||||||||||| | |||||||    
T  28077103 ataagctctctaaaatagcttatgaaaacagtttgattttcttttatctttggttatagaaatagcttatacaaatacacttat 28077186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 24190399 - 24190455
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||| |||||||||||||||||  | | ||||||||||||||| |||||    
T  24190399 cacattttctttgtaccaaaatataagaaaaa--agacaaacttttatcttttccaaga 24190455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 196 - 249
Target Start/End: Original strand, 2125965 - 2126017
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatcttttt 249  Q
    |||||||||||||||| |||||||||| ||||| | | ||||||||||||||||    
T  2125965 cacattttctttgtcctaaaatataagtaaaaa-agacaaacttttatcttttt 2126017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 16854034 - 16854082
Alignment:
Q  198 cattttctttgtcccaaaatataag--aaaaaataaataaacttttatc 244  Q
    |||||||||||||||||||||||||  |||||| ||| |||||||||||    
T  16854034 cattttctttgtcccaaaatataagcaaaaaaaaaaacaaacttttatc 16854082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Complemental strand, 24728889 - 24728845
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttat 243  Q
    ||||||||||||| |||||||||||| |||||||||||| ||||||    
T  24728889 cattttctttgtctcaaaatataaga-aaaataaataaatttttat 24728845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 36; Significance: 0.00000000006; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 199 - 254
Target Start/End: Original strand, 154792 - 154846
Alignment:
Q  199 attttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||| ||||||||||| ||||| | |||||||||||||||||||||||    
T  154792 attttctttgtctcaaaatataagtaaaaa-agataaacttttatctttttcaaga 154846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 3095954 - 3095897
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  3095954 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 3095897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 196 - 248
Target Start/End: Original strand, 21542346 - 21542397
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttt 248  Q
    ||||||||||||||||||||||||||| ||||| | | |||||||||||||||    
T  21542346 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctttt 21542397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 197 - 254
Target Start/End: Complemental strand, 11082477 - 11082422
Alignment:
Q  197 acattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||| |||||||||||| ||||  | | |||||||||||||||||||||    
T  11082477 acattttctttgtaccaaaatataagcaaaa--acacaaacttttatctttttcaaga 11082422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 34177874 - 34177817
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||| |||||||||||| ||||| | | ||||||||||||||| |||||    
T  34177874 cacattttctttgtaccaaaatataagtaaaaa-acacaaacttttatcttttccaaga 34177817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 35129288 - 35129231
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||| ||| ||||| | | ||||||||||||||| |||||    
T  35129288 cacattttctttgtcccaaaatacaagcaaaaa-agacaaacttttatcttttccaaga 35129231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 6110433 - 6110376
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||| ||||| | | ||||||||||||||| |||||    
T  6110433 cacattttctttgtcccaaaatataagcaaaaa-agacaaacttttatcttttccaaga 6110376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 41528184 - 41528241
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||| |||||||||||||||||| ||||| | | |||||||||||||||||||||    
T  41528184 cacattttgtttgtcccaaaatataagcaaaaa-agacaaacttttatctttttcaaga 41528241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 45085188 - 45085236
Alignment:
Q  199 attttctttgtcccaaaatataagaaaaaataaataaacttttatctttt 248  Q
    |||||||||||||||||||||||| ||||| | |||||||||||||||||    
T  45085188 attttctttgtcccaaaatataagcaaaaa-agataaacttttatctttt 45085236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 14873859 - 14873905
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatc 244  Q
    ||||||||||||||||||||||||| ||||| ||| ||| |||||||    
T  14873859 cattttctttgtcccaaaatataagcaaaaaaaaacaaatttttatc 14873905  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 28599381 - 28599324
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||||||||||||||||||  ||||| | | ||||||||||||||| |||||    
T  28599381 cacattttctttgtcccaaaatataatcaaaaa-agacaaacttttatcttttccaaga 28599324  T

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Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Original strand, 35517050 - 35517107
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    ||||||||||| || |||||||||||| ||||| | | |||||||||||||||||||||    
T  35517050 cacattttcttcgtaccaaaatataagcaaaaa-agacaaacttttatctttttcaaga 35517107  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 198 - 244
Target Start/End: Original strand, 45660261 - 45660306
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatc 244  Q
    ||||||||||||||||||||||||| ||||| ||| |||||||||||    
T  45660261 cattttctttgtcccaaaatataagcaaaaa-aaacaaacttttatc 45660306  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 198 - 243
Target Start/End: Original strand, 25571943 - 25571987
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttat 243  Q
    ||||||||||||||||||||||||| ||||| ||| ||||||||||    
T  25571943 cattttctttgtcccaaaatataagcaaaaa-aaacaaacttttat 25571987  T

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Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 196 - 228
Target Start/End: Complemental strand, 18834155 - 18834123
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaa 228  Q
    ||||||||||||||||||||||||||| |||||    
T  18834155 cacattttctttgtcccaaaatataagcaaaaa 18834123  T

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Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 198 - 246
Target Start/End: Original strand, 19263998 - 19264045
Alignment:
Q  198 cattttctttgtcccaaaatataagaaaaaataaataaacttttatctt 246  Q
    ||||||||||||||||||||||||| ||||| | | |||||||||||||    
T  19263998 cattttctttgtcccaaaatataagcaaaaa-agacaaacttttatctt 19264045  T

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Target: scaffold0774 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0774
Description:

Target: scaffold0774; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 202 - 248
Target Start/End: Complemental strand, 3655 - 3610
Alignment:
Q  202 ttctttgtcccaaaatataagaaaaaataaataaacttttatctttt 248  Q
    ||||||||||||||||||||| ||||| | |||||||||||||||||    
T  3655 ttctttgtcccaaaatataagcaaaaa-agataaacttttatctttt 3610  T

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Target: scaffold0300 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0300
Description:

Target: scaffold0300; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 196 - 254
Target Start/End: Complemental strand, 806 - 749
Alignment:
Q  196 cacattttctttgtcccaaaatataagaaaaaataaataaacttttatctttttcaaga 254  Q
    |||||||||||||| |||||||||||| ||||| | | ||||||||||||||| |||||    
T  806 cacattttctttgtaccaaaatataagcaaaaa-acacaaacttttatcttttccaaga 749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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