View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9109_low_3 (Length: 514)
Name: NF9109_low_3
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9109_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 166; Significance: 1e-88; HSPs: 17)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 326 - 499
Target Start/End: Original strand, 4841466 - 4841639
Alignment:
| Q |
326 |
attccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatgacacaattgaa |
425 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4841466 |
attccaaatgacatattttggaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatggtgatattttttagatgacacaattgaa |
4841565 |
T |
|
| Q |
426 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatccaattg |
499 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4841566 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatccaattg |
4841639 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 326 - 499
Target Start/End: Complemental strand, 5183389 - 5183215
Alignment:
| Q |
326 |
attccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatg-acacaattga |
424 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |||| ||||||||| | |||||||||| |
|
|
| T |
5183389 |
attccaaatgacatattttgaaagcaagatggtattgaagcattgagcatgttccgtgataagtccattatgttgatcttttttagaaggacacaattga |
5183290 |
T |
|
| Q |
425 |
attggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatccaattg |
499 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5183289 |
attggaatatctccttcaaaattgttccctcctaatagaaggacccttaactctgagagcttatccatccaattg |
5183215 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5183720 - 5183541
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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|
| T |
5183720 |
tggaataggaccagacaagtaattatgtgatagattcaaggctttaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcat |
5183621 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaactgcacttc |
180 |
Q |
| |
|
|||||||||||||| |||||| ||| ||| | | |||| |||||||||||||| || ||||||||||| ||||||||||| |
|
|
| T |
5183620 |
gataaatccaatccagtcatgatctttagaactatacccttgtaaaagtaatcatagtgctttgttctaaactgcacttc |
5183541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 1 - 183
Target Start/End: Complemental strand, 5197119 - 5196937
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5197119 |
tggaatgggacctgacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcat |
5197020 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaactgcacttccaa |
183 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | |||||| ||||||||||| || || |||||||||||||||| ||||||||| |
|
|
| T |
5197019 |
gataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttccaa |
5196937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 116; E-Value: 9e-59
Query Start/End: Original strand, 1 - 180
Target Start/End: Complemental strand, 5174378 - 5174199
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5174378 |
tggaatgggaccagacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgagaagggatgacacctgttagcttattgcat |
5174279 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaactgcacttc |
180 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | | |||| |||||| |||| || | |||||||||||||||| |||||| |
|
|
| T |
5174278 |
gataaatccaatccagtcatattctctagaactatacccttgtaagagtattcattgtgctttgttctgaactccacttc |
5174199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 197
Target Start/End: Complemental strand, 5161437 - 5161241
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||| || |||||| |||| |||| ||||||||||| |||||||||||| |||||| |
|
|
| T |
5161437 |
tggaataggacccgacaagtgattatgtgataggttcaaggctaaaacttgttgcaggtgcccaatttgagaagggatagtacctgttagcttgttgcat |
5161338 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaactgcacttccaagtatagttcgccat |
197 |
Q |
| |
|
|||||||||||||| ||||| |||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
5161337 |
gataaatccaatccagtcattttctctaggactttacctttgtaaaagtaatcattgtgctttgttctgaactccacttccaagtgtagttcgccat |
5161241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 326 - 495
Target Start/End: Complemental strand, 5174053 - 5173884
Alignment:
| Q |
326 |
attccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatgacacaattgaa |
425 |
Q |
| |
|
||||||||||||| |||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||| ||| ||||| | ||| ||||||| |
|
|
| T |
5174053 |
attccaaatgacatattttggaggcaagatggtattgaagcattgagcatgttccgtgatagatccattatgtcgatctttttgaaccaacaaaattgaa |
5173954 |
T |
|
| Q |
426 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatcca |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||| |
|
|
| T |
5173953 |
ttggaatttctccttcaaaattgttccctcctaataaaagaaccctcaactctgagagcttatccatcca |
5173884 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 326 - 495
Target Start/End: Complemental strand, 5196794 - 5196625
Alignment:
| Q |
326 |
attccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatgacacaattgaa |
425 |
Q |
| |
|
||||||||| ||| |||| | |||||||||||||| |||||||||||||||||||||||||||||||||||| |||| ||||||| ||||||| || | |
|
|
| T |
5196794 |
attccaaataacatatttcgaaagcaagatggtatggaagcattgagcatgtttcgtgataagtccattatgttgatcttttttaaccgacacaactgca |
5196695 |
T |
|
| Q |
426 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatcca |
495 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||| ||||||| |||||||||||| |
|
|
| T |
5196694 |
ttggaatttctccttcaaaattgttccctcctaataaaaggacccttaattctgagaacttatccatcca |
5196625 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4855650 - 4855829
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||| | |||| |||| |||| ||||||||||||||||||||||| ||||| ||| |
|
|
| T |
4855650 |
tggaataggaccagacaagtgattatgtgataggttcaaggctctaactggttgaaggtgaccaatttgagaagggatgacacctgttaggttattccat |
4855749 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaactgcacttc |
180 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | |||||| ||||||||||| || || |||||||||||||||| |||||| |
|
|
| T |
4855750 |
gataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaactccacttc |
4855829 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 5215264 - 5215092
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| ||| |||||| |||| |||| ||||||||||||| ||||||||| ||||| ||| |
|
|
| T |
5215264 |
tggaataggaccagacaagtgattatgtgataggttcaaggctctaacttgttgaaggtgaccaatttgagaagggatgagacctgttaggttattccat |
5215165 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaact |
173 |
Q |
| |
|
|||||||||||||| ||||| |||||||| | |||||| ||||||||||| || || |||||||||||||||| |
|
|
| T |
5215164 |
gataaatccaatccagtcatattctctagaactttacccttgtaaaagtattcatagtgctttgttctgaact |
5215092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 96; E-Value: 7e-47
Query Start/End: Original strand, 1 - 180
Target Start/End: Original strand, 4841144 - 4841323
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
|||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| || |||||||| |||||||||| ||||||||| |
|
|
| T |
4841144 |
tggaatgggacctgacaagtgattatgtgatagattcaaggctctaatttgttgtaggtctccaatttgggaagggataacacctgttaaattattgcat |
4841243 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaactgcacttc |
180 |
Q |
| |
|
|||||||||||||| ||||| ||||||| | |||||| ||||||||||| || | ||||||||||| |||| |||||| |
|
|
| T |
4841244 |
gataaatccaatccagtcataatctctagaactttacccttgtaaaagtattcattgtgctttgttctaaactccacttc |
4841323 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 326 - 495
Target Start/End: Original strand, 4855963 - 4856132
Alignment:
| Q |
326 |
attccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatgacacaattgaa |
425 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| ||| ||||||| |||||||||||| |
|
|
| T |
4855963 |
attccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtcgatcttttttaaccgacacaattgaa |
4856062 |
T |
|
| Q |
426 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatcca |
495 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| || |||||| | ||||||||| || ||||||||||| |
|
|
| T |
4856063 |
ttggaatatctccttccaagttgttccctcctagtaaaagaacacgtaactctgataggttatccatcca |
4856132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 326 - 495
Target Start/End: Complemental strand, 5214951 - 5214782
Alignment:
| Q |
326 |
attccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatgacacaattgaa |
425 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||| || ||||||| |||||||||||| |
|
|
| T |
5214951 |
attccaaatgacatatttcggaagcaagatggtattgaagcattgagcatgttccgtgataggtccattatgtctatcttttttaaccgacacaattgaa |
5214852 |
T |
|
| Q |
426 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatcca |
495 |
Q |
| |
|
||||||| |||||||| || ||||||||||||| || |||||| | ||||||||| |||||||||||||| |
|
|
| T |
5214851 |
ttggaatatctccttccaatttgttccctcctagtaaaagaacacgtaactctgatagcttatccatcca |
5214782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 326 - 495
Target Start/End: Complemental strand, 7143293 - 7143124
Alignment:
| Q |
326 |
attccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatgacacaattgaa |
425 |
Q |
| |
|
||||||||||||| |||||||||||||| ||||||||||||||||||||||||| ||||| ||| ||| || ||| ||||||| |||||||||||| |
|
|
| T |
7143293 |
attccaaatgacatattttggaagcaaggtggtattgaagcattgagcatgttttctgataggtctattttgtcgatcttttttaaccgacacaattgaa |
7143194 |
T |
|
| Q |
426 |
ttggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatcca |
495 |
Q |
| |
|
||||||| |||||||| |||||||||| |||||||| |||||| | ||||||||| |||||||||||||| |
|
|
| T |
7143193 |
ttggaatatctccttccaaattgttccttcctaataaaagaacacgtaactctgatagcttatccatcca |
7143124 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 320 - 499
Target Start/End: Complemental strand, 5161153 - 5160974
Alignment:
| Q |
320 |
tgtcctattccaaatgacaaattttggaagcaagatggtattgaagcattgagcatgtttcgtgataagtccattatggtgatattttttagatgacaca |
419 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||| || |||| |||||| ||| |||| ||||||| |||||| |
|
|
| T |
5161153 |
tgtcctataccaaatgtcaaattttggaagcaagatggtattgaagcattgaacatgttccgcgataggtccatcatgttgatcttttttaatcgacaca |
5161054 |
T |
|
| Q |
420 |
attgaattggaatttctccttcaaaattgttccctcctaatagaagaacccttaactctgagagcttatccatccaattg |
499 |
Q |
| |
|
||||||||||||| |||||||| || || |||| ||||| || |||||| | ||||||||||| ||||| ||||||||| |
|
|
| T |
5161053 |
attgaattggaatatctccttccaagttattccatcctagtaaaagaacacgcaactctgagagattatcaatccaattg |
5160974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 176
Target Start/End: Complemental strand, 7143583 - 7143408
Alignment:
| Q |
1 |
tggaataggaccagacaagtgattatgtgatagattcaaggctttaatttgttgtaggtctccaacgtgagaagggatgacacctgttagcttattgcat |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||||||||||| || | | ||| | |||||||| | |||||| ||||| | |||| |||||||| |
|
|
| T |
7143583 |
tggaataggacctgacaagtgattatgttatagattcaagactcgatggttttgcatgtctccaagttcagaaggtatgactctagttacgatattgcat |
7143484 |
T |
|
| Q |
101 |
gataaatccaatcctgtcatgttctctaggattttacctttgtaaaagtaatcgtaatgctttgttctgaactgca |
176 |
Q |
| |
|
|||||||||||||| ||||| |||||||||||||| | | ||||||||| || || | ||||||||| ||||||| |
|
|
| T |
7143483 |
gataaatccaatccagtcatcatctctaggattttagcgtcgtaaaagtactcatagttctttgttctaaactgca |
7143408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 361 - 409
Target Start/End: Complemental strand, 5203597 - 5203549
Alignment:
| Q |
361 |
tgaagcattgagcatgtttcgtgataagtccattatggtgatatttttt |
409 |
Q |
| |
|
|||||||||||||||||| ||||||| |||||| ||| ||||| ||||| |
|
|
| T |
5203597 |
tgaagcattgagcatgttccgtgataggtccatcatgttgataattttt |
5203549 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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