View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9109_low_4 (Length: 444)
Name: NF9109_low_4
Description: NF9109
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9109_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 391; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 1 - 428
Target Start/End: Complemental strand, 48003290 - 48002863
Alignment:
| Q |
1 |
tcttcctacctttacacctgccggagagtttccaggcttagcagtagttgtacttccaaaattgagctttgnnnnnnnatcagcgggctttaatatttgg |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||| |
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|
| T |
48003290 |
tcttcctacctttacacctgccggagagtttccaggcttagcagtagttgtacttccaaaattgagctttgtttttttatcggcgggctttaatatttgg |
48003191 |
T |
|
| Q |
101 |
aaagagcacattagtgtctcatcaacactcatcatagcaccggcattgtcaaactccccacaataattaggtgctgaaaatattgttacgagctgtcgat |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48003190 |
aaagagcacattagtgtctcatcaacactcatcatagcaccggcattgtcaaactccccacaataattaggtgctgaaaatattgttacgagctgtcgat |
48003091 |
T |
|
| Q |
201 |
cagcaaagaactcatatccatcctccacaacctggtcaaaacatgaagggaaaaaaccggttatattcaacagcatagttgattgacacataatagtctc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
48003090 |
cagcaaagaactcatatccatcctccacaacctggtcaaaacatgaagggaaaaaaccggttatattcaacagcatagttgattgacacataatattctc |
48002991 |
T |
|
| Q |
301 |
caatataaacacaagataatgcacagaatgaagcatcaaatgccaaacctaatggaatgcatgacatgtggggaattttagggtcaatgcataaaactat |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48002990 |
caatataaacacaagataatgcacagaatgaagcatcaaatgccaaacctaatggaatgcatgacatgtggggaattttagggtcaatgcataaaaatat |
48002891 |
T |
|
| Q |
401 |
gtcatgtcacgtttacaaaggcaaatat |
428 |
Q |
| |
|
|||||||||||||||| ||||||||||| |
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|
| T |
48002890 |
gtcatgtcacgtttacgaaggcaaatat |
48002863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 35518028 - 35517788
Alignment:
| Q |
1 |
tcttcctacctttacacctgccggagagtttccaggcttagcagtagttgtacttccaaaattgagctttgnnnnnnnatcagcgggctttaatatttgg |
100 |
Q |
| |
|
||||||||||||||||||||| ||||||||||| || |||| ||| || |||||||||||||||||||||| |||||| ||||||||||||||| |
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|
| T |
35518028 |
tcttcctacctttacacctgctggagagtttcctggtttagtagtggtcgtacttccaaaattgagctttgtttttttatcagctggctttaatatttgg |
35517929 |
T |
|
| Q |
101 |
aaagagcacattagtgtctcatcaacactcatcatagcaccggcattgtcaaactccccacaataattaggtgctgaaaatattgttacgagctgtcgat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||| |||||||| || |||||||||||||| ||||| || | |
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|
| T |
35517928 |
aaagagcacattagtgtctcatcaacactcatcatagcaccagcgttgtcaaactccccacagtaattaggcgccgaaaatattgttacaagctgccggt |
35517829 |
T |
|
| Q |
201 |
cagcaaagaactcatatccatcctccacaacctggtcaaaa |
241 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
35517828 |
tagcaaagaactcatatccatcctccaccacctggtcaaaa |
35517788 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 89 - 233
Target Start/End: Complemental strand, 16195653 - 16195509
Alignment:
| Q |
89 |
tttaatatttggaaagagcacattagtgtctcatcaacactcatcatagcaccggcattgtcaaactccccacaataattaggtgctgaaaatattgtta |
188 |
Q |
| |
|
|||||||| || ||||| ||||| ||||||||||||||||||||||| || || |||||||||||||| ||||| |||||||| || |||||||| || | |
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|
| T |
16195653 |
tttaatatctgaaaagaacacataagtgtctcatcaacactcatcattgctccagcattgtcaaactctccacagtaattaggagcagaaaatatagtca |
16195554 |
T |
|
| Q |
189 |
cgagctgtcgatcagcaaagaactcatatccatcctccacaacct |
233 |
Q |
| |
|
| || |||| || |||||| |||||||||||||| || ||||||| |
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|
| T |
16195553 |
caagttgtctattagcaaaaaactcatatccatcttcaacaacct |
16195509 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 129 - 234
Target Start/End: Complemental strand, 33091543 - 33091438
Alignment:
| Q |
129 |
tcatcatagcaccggcattgtcaaactccccacaataattaggtgctgaaaatattgttacgagctgtcgatcagcaaagaactcatatccatcctccac |
228 |
Q |
| |
|
||||||||||||| |||||||||| || ||||| |||||||| |||||||| ||||||||||| |||| || ||||||||||| ||||| || || || |
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|
| T |
33091543 |
tcatcatagcaccaacattgtcaaagtcaccacagtaattaggcgctgaaaagattgttacgagttgtctattcgcaaagaactcgtatccgtcttcaac |
33091444 |
T |
|
| Q |
229 |
aacctg |
234 |
Q |
| |
|
|||||| |
|
|
| T |
33091443 |
aacctg |
33091438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 98 - 234
Target Start/End: Complemental strand, 34787674 - 34787538
Alignment:
| Q |
98 |
tggaaagagcacattagtgtctcatcaacactcatcatagcaccggcattgtcaaactccccacaataattaggtgctgaaaatattgttacgagctgtc |
197 |
Q |
| |
|
||||| |||||||||| |||| || ||||||||||| ||||| ||||||||||| || ||||| || || || |||||||||||||| || || |||| |
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|
| T |
34787674 |
tggaaggagcacattaagttctcgtccacactcatcattgcaccagcattgtcaaattcaccacagtagtttggagctgaaaatattgtaacaagttgtc |
34787575 |
T |
|
| Q |
198 |
gatcagcaaagaactcatatccatcctccacaacctg |
234 |
Q |
| |
|
|| ||||| || ||||| |||||||| |||||||| |
|
|
| T |
34787574 |
tgtctgcaaaaaattcatacccatcctctacaacctg |
34787538 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 119 - 234
Target Start/End: Original strand, 41499405 - 41499520
Alignment:
| Q |
119 |
tcatcaacactcatcatagcaccggcattgtcaaactccccacaataattaggtgctgaaaatattgttacgagctgtcgatcagcaaagaactcatatc |
218 |
Q |
| |
|
||||| ||||||||||||||||||||||| |||||||| ||||| ||||| ||||| || |||| || || |||| || | ||||| |||||||||| |
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|
| T |
41499405 |
tcatccacactcatcatagcaccggcattatcaaactcaccacagtaatttggtgcagagaatacagtcaccagcttacgtttggcaaaaaactcatatc |
41499504 |
T |
|
| Q |
219 |
catcctccacaacctg |
234 |
Q |
| |
|
|||| || |||||||| |
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|
| T |
41499505 |
catcttctacaacctg |
41499520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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