View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9110_low_1 (Length: 510)

Name: NF9110_low_1
Description: NF9110
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9110_low_1
NF9110_low_1
[»] chr5 (3 HSPs)
chr5 (1-496)||(38625017-38625512)
chr5 (49-496)||(11771924-11772381)
chr5 (31-387)||(17552874-17553236)
[»] chr7 (7 HSPs)
chr7 (1-496)||(46245423-46245917)
chr7 (43-388)||(11747741-11748097)
chr7 (31-387)||(14780795-14781157)
chr7 (31-387)||(15230828-15231190)
chr7 (124-388)||(15135817-15136081)
chr7 (1-380)||(31734116-31734513)
chr7 (1-82)||(15135679-15135762)
[»] chr2 (2 HSPs)
chr2 (1-496)||(45499606-45500102)
chr2 (1-496)||(40303594-40304090)
[»] chr3 (4 HSPs)
chr3 (1-496)||(41082533-41083029)
chr3 (1-496)||(31796104-31796592)
chr3 (31-496)||(48567722-48568196)
chr3 (1-320)||(40498690-40499010)
[»] chr4 (2 HSPs)
chr4 (103-496)||(42226097-42226485)
chr4 (416-483)||(51154379-51154446)
[»] chr1 (1 HSPs)
chr1 (340-496)||(22683473-22683628)


Alignment Details
Target: chr5 (Bit Score: 472; Significance: 0; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 472; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 38625017 - 38625512
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaatg 100  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38625017 ttaaaacccttgttgtttccatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaacg 38625116  T
Q  101 acttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttc 200  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  38625117 acttataattttcacagattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcataaaaattcttc 38625216  T
Q  201 cttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625217 cttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaac 38625316  T
Q  301 aacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625317 aacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctc 38625416  T
Q  401 aaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38625417 aaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 38625512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 49 - 496
Target Start/End: Complemental strand, 11772381 - 11771924
Alignment:
Q  49 ggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaat-gacttataattttcacatattttattcatc---------ctcttctca 138  Q
    |||||||||  |||||| ||||||||||||||||||||||||||||||||  ||||||||||||||||| ||||||||||||         |||||||||    
T  11772381 ggaccaattctaaaaacaaaaattacaagagggattaaacggggaaaaaaacgacttataattttcacagattttattcatcttcttcatcctcttctca 11772282  T
Q  139 tcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttccttctcgaatcttcatcttcaaaactaaattcatcatt 238  Q
    ||||||| |||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||| ||||||||||||||||||||||||    
T  11772281 tcttctttcatcttaacccagataaaccatcattcttcaatcctaactcattaaaattcttccttctcgaatctttatcttcaaaactaaattcatcatt 11772182  T
Q  239 caccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaacacatccacaccacattaataaattccactagagtg 338  Q
    ||||||||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||    
T  11772181 caccaaaaaatcatcaaacccgcactttctttaatccctctctattcttttcaatcctaaacaacatatccacaccacattaataaattccaccggagtg 11772082  T
Q  339 aaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctcaaaaattgaagtagaaattttgtatacatcaacctatt 438  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  11772081 aaacacaacttgtaactccataaccctcaaatttcttcaattccaattttccaattcttttcaaaaattgaagtagaaattttgtatacaccaacctatt 11771982  T
Q  439 acattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11771981 acattcgtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 11771924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 138; E-Value: 6e-72
Query Start/End: Original strand, 31 - 387
Target Start/End: Complemental strand, 17553236 - 17552874
Alignment:
Q  31 tctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaatgacttataattttcacatattttattcatc- 129  Q
    |||||||  |||||||||||||||||| ||||||| |||||||||||||||| ||||||   |||||||    ||||||||||||| |||  |||||||     
T  17553236 tctctctgcgtgttttagggaccaattccaaaaactaaaattacaagagggactaaacgaaaaaaaaat----tataattttcacagattgcattcatct 17553141  T
Q  130 --------ctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttccttctcgaatcttcatcttca 221  Q
            ||||||||||||||| ||||||||||  |||||| | ||| || ||||||| |||| |  ||||||||  ||||||||||||||||||||||    
T  17553140 tcttcaccctcttctcatcttctcccatcttaacttagaaaatcaatcctttttcaatcgtaacccagaaaaattccaccttctcgaatcttcatcttca 17553041  T
Q  222 aaactaaattcatcattcacc-aaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaacacatccacaccacatta 320  Q
    ||||||||||||||  ||||  ||||||| ||||||||||||||| |||||| || || ||| | |||| ||||| |||||| |||||||||||||||||    
T  17553040 aaactaaattcatcggtcacgtaaaaaatcatcaaacccacattttctttaagccatcgctactattttgaatcccaaacaaaacatccacaccacatta 17552941  T
Q  321 ataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattt 387  Q
    ||||| || ||| ||||||| |||||||||||||||||||||  |||||||||||||||||||||||    
T  17552940 ataaagtctactggagtgaagcacaacttgtaactccataactttcaaattacttcaattccaattt 17552874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 456; Significance: 0; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 456; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 46245423 - 46245917
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaatg 100  Q
    |||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  46245423 ttaaaacccttgttgtttccatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaacg 46245522  T
Q  101 acttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttc 200  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||    
T  46245523 acttataattttcacagattttattcatc-tcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcccaactcataaaatttcttc 46245621  T
Q  201 cttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaac 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245622 cttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaac 46245721  T
Q  301 aacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctc 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245722 aacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctc 46245821  T
Q  401 aaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46245822 aaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 46245917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 43 - 388
Target Start/End: Original strand, 11747741 - 11748097
Alignment:
Q  43 ttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaa---aatgacttataattttcacatattttattcatc---------c 130  Q
    |||||| |||||||||||||||||||||||||||| |||| |||||||  ||||   || |||||||||||||||||  ||| |||||||         |    
T  11747741 ttttagagaccaatttcaaaaacgaaaattacaagggggactaaacggaaaaaagaaaacgacttataattttcacaggtttcattcatcttcttcatcc 11747840  T
Q  131 tcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttccttctcgaatcttcatcttcaaaactaaat 230  Q
    |||||||||||||||||||||||||||||||||  |||| |||||||||| |||  |  |||||||| ||||||||||||||||||||||||| ||||||    
T  11747841 tcttctcatcttcttccatcttaacccagaaaattcatccttcttcaatcgtaatccagaaaaattcctccttctcgaatcttcatcttcaaa-ctaaat 11747939  T
Q  231 tcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaacacatccacaccacattaataaattcca 330  Q
    |||||| |||||||||||| |||||||||| | || |||||||||||||||| | |||||||||| |||||| |||||||||||| |||||||||||| |    
T  11747940 tcatcagtcaccaaaaaatcatcaaacccataatttctttaatccctctctactattttcaatcccaaacaatacatccacaccatattaataaattcta 11748039  T
Q  331 ctagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaatttt 388  Q
    || ||||||| |||||||||||||||||||||||||||||||| |||||| |||||||    
T  11748040 ctggagtgaagcacaacttgtaactccataaccctcaaattacatcaatttcaatttt 11748097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 31 - 387
Target Start/End: Original strand, 14780795 - 14781157
Alignment:
Q  31 tctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaatgacttataattttcacatattttattcatc- 129  Q
    |||||||  |||||||||||||||||||||||||| ||||||| |||||||| ||||||   |||||||    ||||||||||||| |||| |||||||     
T  14780795 tctctctgcgtgttttagggaccaatttcaaaaactaaaattaaaagagggactaaacgaaaaaaaaat----tataattttcacagatttcattcatct 14780890  T
Q  130 --------ctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttccttctcgaatcttcatcttca 221  Q
            ||||||||||||||| ||||||||||  |||||| || || || ||||| | |||| |  ||||||||  ||||||||||||||||||||||    
T  14780891 tcttcaccctcttctcatcttctgccatcttaacttagaaaatccgtcttttttcaaccgtaacccagaaaaattccaccttctcgaatcttcatcttca 14780990  T
Q  222 aaactaaattcatcattcacc-aaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaacacatccacaccacatta 320  Q
    ||||||||||||||  ||||  ||||||| ||||||||||||||| |||||||||||| ||| | |||| ||||| |||||| |||||||||||||||||    
T  14780991 aaactaaattcatcggtcacgtaaaaaatcatcaaacccacattttctttaatccctcgctactattttgaatcccaaacaaaacatccacaccacatta 14781090  T
Q  321 ataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattt 387  Q
    |||||||| |||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||    
T  14781091 ataaattctactagagtgaagaacaacttgtaactccataactctcaaattacttcaattctaattt 14781157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 31 - 387
Target Start/End: Original strand, 15230828 - 15231190
Alignment:
Q  31 tctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaatgacttataattttcacatattttattcatc- 129  Q
    |||||||  |||||||||||||||||||||||||| ||||||| |||||||| ||||||   |||||||    ||||||||||||| |||| |||||||     
T  15230828 tctctctgcgtgttttagggaccaatttcaaaaactaaaattaaaagagggactaaacgaaaaaaaaat----tataattttcacagatttcattcatct 15230923  T
Q  130 --------ctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttccttctcgaatcttcatcttca 221  Q
            ||||||||||||||| ||||||||||  |||||| || || || ||||| | |||| |  ||||||||  ||||||||||||||||||||||    
T  15230924 tcttcaccctcttctcatcttctgccatcttaacttagaaaatccgtcttttttcaaccgtaacccagaaaaattccaccttctcgaatcttcatcttca 15231023  T
Q  222 aaactaaattcatcattcacc-aaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaacacatccacaccacatta 320  Q
    ||||||||||||||  ||||  ||||||| ||||||||||||||| |||||||||||| ||| | |||| ||||| |||||| |||||||||||||||||    
T  15231024 aaactaaattcatcggtcacgtaaaaaatcatcaaacccacattttctttaatccctcgctactattttgaatcccaaacaaaacatccacaccacatta 15231123  T
Q  321 ataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattt 387  Q
    |||||||| |||||||||||  |||||||||||||||||||| |||||||||||||||||| |||||    
T  15231124 ataaattctactagagtgaagaacaacttgtaactccataactctcaaattacttcaattctaattt 15231190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 124 - 388
Target Start/End: Original strand, 15135817 - 15136081
Alignment:
Q  124 ttcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttccttctcgaatcttcatcttcaaa 223  Q
    |||||||| |||||||||| |  |||||||||  |||||| ||||| || ||||||| |||| |  |||||||| |||||||||||||||||||||||||    
T  15135817 ttcatccttttctcatcttttgtcatcttaacttagaaaatccatcctttttcaatcgtaacccagaaaaattcctccttctcgaatcttcatcttcaaa 15135916  T
Q  224 actaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaacacatccacaccacattaata 323  Q
    ||||||||||||  ||||||| |||| ||||||| ||||||| |||||||||||| ||| | |||||||||  |||||| ||||||||||||||||||||    
T  15135917 actaaattcatcggtcaccaagaaatcatcaaactcacattttctttaatccctcgctactattttcaatcgcaaacaatacatccacaccacattaata 15136016  T
Q  324 aattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaatttt 388  Q
    ||||| | |  |||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  15136017 aattctattgaagtgaagcacaacttgtaactccataaccctcaaattacttcaattccaatttt 15136081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 131; E-Value: 1e-67
Query Start/End: Original strand, 1 - 380
Target Start/End: Complemental strand, 31734513 - 31734116
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctg--tgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaa--- 95  Q
    |||||||||||| |||||  || ||||||  |||||||||  ||||||||||||||||| |||||||||||||||||||| | | |||||||  |||       
T  31734513 ttaaaacccttgttgtttccatcttcttcccctctctctgcgtgttttagggaccaattccaaaaacgaaaattacaagaagcaataaacggaaaaagaa 31734414  T
Q  96 -----aaatgacttataattttcacatattttattcatc---------ctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcc 181  Q
         ||| ||||||||||||||||| |||| |||||||         |||||||||||||||||||||| ||||||||||| || || ||||| ||||     
T  31734413 aaaaaaaacgacttataattttcacagatttgattcatcttattcattctcttctcatcttcttccatctcaacccagaaaatccgtccttctttaatcg 31734314  T
Q  182 taactcgtaaaaattcttccttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctct 281  Q
    |||| | |  |||||  ||||||||||||||||||||||||||  |||||||||| ||||  |||||| ||||||||||||||| |||||||||||||||    
T  31734313 taacccatggaaatttctccttctcgaatcttcatcttcaaaagaaaattcatcagtcactgaaaaatcatcaaacccacattttctttaatccctctct 31734214  T
Q  282 attcttttcaatcctaaacaacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaatt 380  Q
    | | ||||  |||| |||||| ||  | ||||||||||||||||||| | |  |||||| |||||||||||||||||||||||||||||||||||||||    
T  31734213 actatttt-tatcccaaacaatacgccgacaccacattaataaattctaatgcagtgaagcacaacttgtaactccataaccctcaaattacttcaatt 31734116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 15135679 - 15135762
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctg--tgttttagggaccaatttcaaaaacgaaaattacaagaggga 82  Q
    ||||||| |||| |||||  || |||||| ||||||||||  ||||||||||||||||| ||||||||||||||||||| ||||    
T  15135679 ttaaaactcttgctgtttccatcttcttcctctctctctgcgtgttttagggaccaattccaaaaacgaaaattacaagtggga 15135762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 453; Significance: 0; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 453; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 45499606 - 45500102
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaat- 99  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  45499606 ttaaaacccttgttgtttccatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaaac 45499705  T
Q  100 gacttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattctt 199  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  45499706 gacttataattttcacagattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcataaaaattctt 45499805  T
Q  200 ccttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 299  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45499806 ctttctcgaatcttcatcttcaaaactaaattcatcattcatcaaaaaatcatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 45499905  T
Q  300 caacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttct 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45499906 caacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttct 45500005  T
Q  400 caaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  45500006 caaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 45500102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Original strand, 40303594 - 40304090
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaat- 99  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  40303594 ttaaaacccttgttgtttccatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaaac 40303693  T
Q  100 gacttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattctt 199  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40303694 gacttataattttcacagattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcataaaaattctt 40303793  T
Q  200 ccttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 299  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40303794 ctttctcgaatcttcatcttcaaaactaaattcatcattcatcaaaaaatcatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 40303893  T
Q  300 caacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttct 399  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40303894 caacacatccacaccacattaataaattccacaagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttct 40303993  T
Q  400 caaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  40303994 caaaaattgaagttgaaattttgtatacatcaacctattacattagtcagcaattgagtttcactttctaactgacaattcattcttgtgttacttg 40304090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 41083029 - 41082533
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaa-t 99  Q
    |||||||||||| |||||  |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  41083029 ttaaaacccttgttgtttccatattctttatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaaat 41082930  T
Q  100 gacttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattctt 199  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  41082929 gacttataattttcacagattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcataaaaattctt 41082830  T
Q  200 ccttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 299  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  41082829 ctttctcgaatcttcatcttcaaaactaaattcatcattcatcaaaaaatcatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 41082730  T
Q  300 caacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttct 399  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41082729 caacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttct 41082630  T
Q  400 caaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41082629 aaaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 41082533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 416; E-Value: 0
Query Start/End: Original strand, 1 - 496
Target Start/End: Complemental strand, 31796592 - 31796104
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaat- 99  Q
    |||||||||||| | |||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  31796592 ttaaaacccttgttatttccatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaaac 31796493  T
Q  100 gacttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattctt 199  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31796492 gacttataattttcacagattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcataaaaattctt 31796393  T
Q  200 ccttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 299  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  31796392 ctttctcgaatcttcatcttcaaaactaaattcatcattcatcaaaaaatcatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 31796293  T
Q  300 caacacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttct 399  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||    
T  31796292 caacatatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattt--------ttct 31796201  T
Q  400 caaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31796200 caaaaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 31796104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 391; E-Value: 0
Query Start/End: Original strand, 31 - 496
Target Start/End: Complemental strand, 48568196 - 48567722
Alignment:
Q  31 tctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaatgacttataattttcacatattttattcatc- 129  Q
    ||||||||| |||||||||||| |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||     
T  48568196 tctctctctctgttttagggacgaattccaaaaacgaaaattacaagagggattaaacggggaaaaaacgacttataattttcacagattttattcatct 48568097  T
Q  130 --------ctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttccttctcgaatcttcatcttca 221  Q
            ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  48568096 tcttcatcctcttctcatcttcttccatcttaacctagaaaaaccataattcttcaatcctaactcataaaaattcttccttctcgaatcttcatcttca 48567997  T
Q  222 aaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaacacatccacaccacattaa 321  Q
    ||||||||||||||||||| |||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48567996 aaactaaattcatcattcatcaaaaaatcatcaaacccacattttctttaatccctctctattcttttcaatcctaaacaacacatccacaccacattaa 48567897  T
Q  322 taaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctcaaaaattgaagtagaaatttt 421  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48567896 taaattccactggagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctcaaaaattgaagtagaaatttt 48567797  T
Q  422 gtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48567796 gtatacaccaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 48567722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 320
Target Start/End: Complemental strand, 40499010 - 40498690
Alignment:
Q  1 ttaaaacccttggtgtttatatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaat- 99  Q
    |||||||||||| |||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      
T  40499010 ttaaaacccttgttgtttccatattcttcatctctctctgtgttttagggaccaatttcaaaaacgaaaattacaagagggattaaacggggaaaaaaac 40498911  T
Q  100 gacttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattctt 199  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  40498910 gacttataattttcacagattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcataaaaattctt 40498811  T
Q  200 ccttctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 299  Q
    | ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  40498810 ctttctcgaatcttcatcttcaaaactaaattcatcattcatcaaaaaatcatcaaacccacatttactttaatccctctctattcttttcaatcctaaa 40498711  T
Q  300 caacacatccacaccacatta 320  Q
    |||||||||||||||||||||    
T  40498710 caacacatccacaccacatta 40498690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 209; Significance: 1e-114; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 103 - 496
Target Start/End: Complemental strand, 42226485 - 42226097
Alignment:
Q  103 ttataattttcacatattttattcatcctcttctcatcttcttccatcttaacccagaaaaaccatcattcttcaatcctaactcgtaaaaattcttcct 202  Q
    |||||||||||||||||||  ||||||   ||||||||||||||||| ||||||| ||||| | ||| ||||||||||||||| | ||||| ||  ||||    
T  42226485 ttataattttcacatatttctttcatc---ttctcatcttcttccattttaaccctgaaaatctatccttcttcaatcctaacacataaaagtttctcct 42226389  T
Q  203 tctcgaatcttcatcttcaaaactaaattcatcattcaccaaaaaataatcaaacccacatttactttaatccctctctattcttttcaatcctaaacaa 302  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||| ||||||| | ||||| ||||||||  ||||||||||||||||||| ||||||    
T  42226388 tctcgaatcttcatcttgaaaactaaattcatcattcacaaaaaaattatcaaactcgcattttctttaatc--tctctattcttttcaatcccaaacaa 42226291  T
Q  303 cacatccacaccacattaataaattccactagagtgaaacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctcaa 402  Q
     ||||||||||||||||||||||||   || || |||||||||||||||||||||||||  ||||| ||||||||||||||||||||| ||||| | |||    
T  42226290 tacatccacaccacattaataaattttgctggaatgaaacacaacttgtaactccataattctcaagttacttcaattccaattttcctattctccccaa 42226191  T
Q  403 aaattgaagtagaaattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    || ||||||||| ||||||||||||| ||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||| |||| ||||    
T  42226190 aacttgaagtaggaattttgtatacaccaacctattgcattagtccgcaactgtgtttcgctttctaactgacaattcattcttatgttgcttg 42226097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 416 - 483
Target Start/End: Original strand, 51154379 - 51154446
Alignment:
Q  416 aattttgtatacatcaacctattacattagtcagcaactgagtttcactttctaactgacaattcatt 483  Q
    ||||||| |||||||||||||||||||||| |||||||  | || ||||||| |||| ||||||||||    
T  51154379 aattttgcatacatcaacctattacattagccagcaaccaaattccactttccaactaacaattcatt 51154446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 129; Significance: 2e-66; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 129; E-Value: 2e-66
Query Start/End: Original strand, 340 - 496
Target Start/End: Original strand, 22683473 - 22683628
Alignment:
Q  340 aacacaacttgtaactccataaccctcaaattacttcaattccaattttccaattcttctcaaaaattgaagtagaaattttgtatacatcaacctatta 439  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||| ||||||||||    
T  22683473 aacacaacttgtaactccataaccctcaaattacttcaattccaattt-ccaattcttctaaaaaattaaagtagaaattttgtatacaccaacctatta 22683571  T
Q  440 cattagtcagcaactgagtttcactttctaactgacaattcattcttgtgttacttg 496  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  22683572 cattagtcagcaactgagtttcactttctaactgacaattcattcctgtgttgcttg 22683628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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