View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9111_high_1 (Length: 425)

Name: NF9111_high_1
Description: NF9111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9111_high_1
NF9111_high_1
[»] chr3 (4 HSPs)
chr3 (129-407)||(41983545-41983823)
chr3 (1-137)||(13563881-13564017)
chr3 (1-137)||(54969604-54969740)
chr3 (243-320)||(9455663-9455740)
[»] chr8 (3 HSPs)
chr8 (130-407)||(44680483-44680774)
chr8 (151-387)||(44689767-44690019)
chr8 (360-407)||(13171532-13171579)
[»] chr5 (1 HSPs)
chr5 (1-137)||(33814307-33814443)
[»] chr4 (1 HSPs)
chr4 (1-137)||(9754702-9754838)
[»] scaffold0479 (1 HSPs)
scaffold0479 (1-137)||(407-543)
[»] chr7 (1 HSPs)
chr7 (1-137)||(4837908-4838044)
[»] chr1 (1 HSPs)
chr1 (181-320)||(233747-233886)


Alignment Details
Target: chr3 (Bit Score: 275; Significance: 1e-154; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 129 - 407
Target Start/End: Complemental strand, 41983823 - 41983545
Alignment:
Q  129 ggaggagccaatgatagagaaagtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaatttttaagttaaacacatacctcacgagggctc 228  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41983823 ggaggagccaatgatagagaaagtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaatttttaagttaaacacatacctcacgagggctc 41983724  T
Q  229 aatttaattagataagcataacttatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttcagaaacat 328  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41983723 aatttaattagataagcataacttatcgtggtactaaaaagatatttccccaacagtgtagtttgtcccaacatttgaaaaatattaatttcagaaacat 41983624  T
Q  329 taatctggccaaaatatattgttgatgtaattattaggaatcttaaatagtcatataattaaccaatatgtgagtcctt 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41983623 taatctggccaaaatatattgttgatgtaattattaggaatcttaaatagtcatataattaaccaatatgtgagtcctt 41983545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 13564017 - 13563881
Alignment:
Q  1 ttctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcctcagatgaattacgatc 100  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||| || || |||||| |||||||||||||||| |||||||||||||    
T  13564017 ttctatgaagatcagacaattcacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcctcaaatgaattacgatc 13563918  T
Q  101 atgatcagctaacagaaccaaatcagatggaggagcc 137  Q
     |||||||||||||||||| ||||||||||| |||||    
T  13563917 gtgatcagctaacagaacccaatcagatggatgagcc 13563881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 54969740 - 54969604
Alignment:
Q  1 ttctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcctcagatgaattacgatc 100  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||| ||||||| || || |||||| |||||||||||||||| |||||||| ||||    
T  54969740 ttctatgaagatcagacaatccacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcctcaaatgaattatgatc 54969641  T
Q  101 atgatcagctaacagaaccaaatcagatggaggagcc 137  Q
     |||||||||||||||||| ||||||||||| |||||    
T  54969640 gtgatcagctaacagaacccaatcagatggatgagcc 54969604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 243 - 320
Target Start/End: Complemental strand, 9455740 - 9455663
Alignment:
Q  243 agcataacttatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttc 320  Q
    ||||||| ||||| ||||||||| |||||  ||| |||||| |||| |||||||||||||||||||||||||| ||||    
T  9455740 agcataatttatcatggtactaagaagatgcttctccaacaatgtaatttgtcccaacatttgaaaaatattattttc 9455663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 132; Significance: 2e-68; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 130 - 407
Target Start/End: Original strand, 44680483 - 44680774
Alignment:
Q  130 gaggagccaatgatagagaaagtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaatttttaagttaaacacatacctc--acgagggct 227  Q
    ||||||||||| ||  ||||| |||||||||||||||||||||||||||||||||||||||||  |||||| ||||| ||||||| |||  || ||||||    
T  44680483 gaggagccaataatgcagaaaatcattttgtaccaaacaaaaaacttgattatacaagtatgcttatttttgagttagacacataactctcaccagggct 44680582  T
Q  228 caatttaattagataagcataacttatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttc------- 320  Q
    ||||||||| || ||| | ||||||||| ||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||           
T  44680583 caatttaatcaggtaaacttaacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatc 44680682  T
Q  321 -----agaaacattaatctggccaaaatatattgttgatgtaattattaggaatcttaaatagtcatataattaaccaatatgtgagtcctt 407  Q
          ||||||| |||  |||||||||||| |||||| ||||||||||||||| ||||||||| |||||||||||||||||||||||||||    
T  44680683 cttgatgaaacatcaatgcggccaaaatatagtgttgaggtaattattaggaatattaaatagttatataattaaccaatatgtgagtcctt 44680774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 151 - 387
Target Start/End: Original strand, 44689767 - 44690019
Alignment:
Q  151 gtcattttgtaccaaacaaaaaacttgattatacaagtatgcaaattttta--agttaaacacatacctc--acgagggctcaatttaattagataagca 246  Q
    |||||||||||||||||||||||  ||||||||||||||||| |||||||   ||||| ||| |||||||  || |||| ||| |||||| || ||| |     
T  44689767 gtcattttgtaccaaacaaaaaagatgattatacaagtatgctaatttttttgagttagacatatacctctcacaagggatcagtttaatcaggtaaact 44689866  T
Q  247 taacttatcgtggtactaaaaagatatttcaccaacagtgtagtttgtcccaacatttgaaaaatattaatttc------------agaaacattaatct 334  Q
    ||||||||| ||||||||||||||| |||| || |||||||| |||||||||||||||||||||||||||||||             ||||||| ||||     
T  44689867 taacttatcatggtactaaaaagatgtttccccgacagtgtaatttgtcccaacatttgaaaaatattaatttcttctatccctgatgaaacatcaatcc 44689966  T
Q  335 ggccaaaatatattgttgatgtaattattaggaatcttaaatagtcatataat 387  Q
    ||||||||||||||||||| ||||||||||| ||| ||||||||| |||||||    
T  44689967 ggccaaaatatattgttgaggtaattattagaaatattaaatagttatataat 44690019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 360 - 407
Target Start/End: Original strand, 13171532 - 13171579
Alignment:
Q  360 tattaggaatcttaaatagtcatataattaaccaatatgtgagtcctt 407  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||    
T  13171532 tattaggaatcttatatagtcatataattaaccaatatgtgagtcctt 13171579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 125; Significance: 3e-64; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 33814307 - 33814443
Alignment:
Q  1 ttctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcctcagatgaattacgatc 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||||||||||||||||||||||||||    
T  33814307 ttctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtggtgcacaattcagggggagagattcctcagatgaattacgatc 33814406  T
Q  101 atgatcagctaacagaaccaaatcagatggaggagcc 137  Q
    |||||||||||||||||||||||||||||||||||||    
T  33814407 atgatcagctaacagaaccaaatcagatggaggagcc 33814443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 93; Significance: 4e-45; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 9754838 - 9754702
Alignment:
Q  1 ttctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcctcagatgaattacgatc 100  Q
    |||||||||||| |||| |||||||||||||||||||| ||||||||| ||||||| || || |||||| ||||||||||||||||||||||||||||||    
T  9754838 ttctatgaagattagacaatccacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcctcagatgaattacgatc 9754739  T
Q  101 atgatcagctaacagaaccaaatcagatggaggagcc 137  Q
     |||||||||||||||||| ||||||||||| |||||    
T  9754738 gtgatcagctaacagaacccaatcagatggatgagcc 9754702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 89; Significance: 9e-43; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 407 - 543
Alignment:
Q  1 ttctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcctcagatgaattacgatc 100  Q
    ||||||||||||||||| || ||||||||||||||||| ||||||||| ||||||| || || |||||| |||||||||||||||| |||||||||||||    
T  407 ttctatgaagatcagacaatacacgacattcaatctaataagccaaaggccattgtggtacacaattcagggggagagattcctcaaatgaattacgatc 506  T
Q  101 atgatcagctaacagaaccaaatcagatggaggagcc 137  Q
     |||||||||||||||||| ||||||||||| |||||    
T  507 gtgatcagctaacagaacccaatcagatggatgagcc 543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 4838044 - 4837908
Alignment:
Q  1 ttctatgaagatcagacgatccacgacattcaatctaaaaagccaaagaccattgtagtgcaaaattcaaggggagagattcctcagatgaattacgatc 100  Q
    ||||||||||||||||| |||||||||||||||||||| ||||||||| | ||||| || || |||||| |||||||||||||||| |||||||||||||    
T  4838044 ttctatgaagatcagacaatccacgacattcaatctaataagccaaaggcgattgtggtacacaattcagggggagagattcctcaaatgaattacgatc 4837945  T
Q  101 atgatcagctaacagaaccaaatcagatggaggagcc 137  Q
     ||||||||||||| |||| ||||||||||| |||||    
T  4837944 gtgatcagctaacataacccaatcagatggatgagcc 4837908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 181 - 320
Target Start/End: Complemental strand, 233886 - 233747
Alignment:
Q  181 atacaagtatgcaaatttttaagttaaacacatacctcacgagggctcaatttaattagataagcataacttatcgtggtactaaaaagatatttcacca 280  Q
    ||||||||| || | ||| | ||||| || |||| |||| ||| ||||| ||||||| ||||||||||||||||| || |||||| |||||  ||| |||    
T  233886 atacaagtaggctagtttctgagttacactcataactcatgagagctcagtttaattggataagcataacttatcttgctactaagaagatgcttcccca 233787  T
Q  281 acagtgtagtttgtcccaacatttgaaaaatattaatttc 320  Q
    ||| | || |||  || ||||||| |||||||||||||||    
T  233786 acaatttaatttaccctaacattttaaaaatattaatttc 233747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University