View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9111_low_1 (Length: 625)
Name: NF9111_low_1
Description: NF9111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9111_low_1 |
 | |
|
| [»] scaffold0555 (1 HSPs) |
| | |
|
| [»] scaffold0043 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 488; Significance: 0; HSPs: 11)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 13868120 - 13867537
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||| |
|
|
| T |
13868120 |
aatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccataaagtaccaaaagtagcacaatgtagaaat |
13868021 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13868020 |
aaatgagaaacagactctgccatgccacacccagtaacacacaatgctgcctcgccaacaatgataccacgccggagaaggtgattcttagtcggcaacc |
13867921 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagc |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |
|
|
| T |
13867920 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtcgccaatggaagcatctggaggttgaacctgagc |
13867821 |
T |
|
| Q |
301 |
tgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccatta |
400 |
Q |
| |
|
||| |||||||||||| || || |||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13867820 |
tgtaagttgttgataggcatctatcaccgtgtaaccgtaatcagaatcggagtcccattgccacctgtcagaaatatcagactgcaaaacgacaccatta |
13867721 |
T |
|
| Q |
401 |
attaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccgtgctca |
500 |
Q |
| |
|
||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |
|
|
| T |
13867720 |
attaaaagcctacactcctctagcatatcctcctcccacacccttaacctacgccgccaattccacgcctctccaacaaccatatcagctaccgtgctca |
13867621 |
T |
|
| Q |
501 |
acttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag |
584 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
13867620 |
acttattagacactaaattaaaaagacgacggaacctgatacaaaaaggaacatcaccaagccacctgtcataccaaaagtaag |
13867537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 328; E-Value: 0
Query Start/End: Original strand, 209 - 584
Target Start/End: Original strand, 45795267 - 45795642
Alignment:
| Q |
209 |
aacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagtt |
308 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
45795267 |
aacaatccccaagcaaaaatggaaaccttaagcggcacctgattatgccaaataaggtctccaatggaagcatctggaggttgaacctgagctgtcagtt |
45795366 |
T |
|
| Q |
309 |
gttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaag |
408 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45795367 |
gttgatagacacctctcaccgtgtaaccacaatcagaatcggagtcccattgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaag |
45795466 |
T |
|
| Q |
409 |
cttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccgtgctcaacttatta |
508 |
Q |
| |
|
| ||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45795467 |
cctacactcctctagcatatcctcctcccacacccttaacctacgccgccaattccacgcctctccatcaaccatatcagctaccgtgctcaacttatta |
45795566 |
T |
|
| Q |
509 |
gacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag |
584 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
45795567 |
gacactaaattaaatagacgacggaaactgatacaaaaaggaacatcacctagccacctgtcataccaaaagtaag |
45795642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 1 - 420
Target Start/End: Complemental strand, 26510662 - 26510243
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||| ||||||| ||| ||| ||||||||||||| |||||| |||||| | ||||||||| ||||| ||| | |||||||| ||||| |
|
|
| T |
26510662 |
aatgaaatggtcatcgatattaaaggggtcaacacctgacattccgatccaagacctgatatgatgccacaatgtaccgaaaatggcacaatgaataaac |
26510563 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
|| |||| ||||||| || |||| || || |||||||||| |||| ||| | |||| | ||||| | | ||| | ||||||||||||||||| |
|
|
| T |
26510562 |
aagtgaggcgcagactcttccttgccgcatcctgtaacacacataactgcttcggtattgattactccacgtctcataagattattcttagtcggcaacc |
26510463 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagc |
300 |
Q |
| |
|
| ||||| ||||| | |||||||| ||||| ||||| |||||||| || |||||||||||||| ||||| || | | ||||| |||| | | ||||| |
|
|
| T |
26510462 |
tgtcccgcaacaaccgtcaagcaaagatggagaccttcagcggcacttgcttatgccagataagatctcccatagtaccatctggaggatcagtctgagt |
26510363 |
T |
|
| Q |
301 |
tgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccatta |
400 |
Q |
| |
|
||||||||||| ||||| ||||||||| |||||||| | | || |||| ||||| ||||||||||||||||||| |||| |||||||||| ||||||| | |
|
|
| T |
26510362 |
tgtcagttgtttatagaaacctctcacagtgtaaccaccagcaaaatcagagtcccattgccacctgtcagaaagatcatactgcaaaacaacaccatca |
26510263 |
T |
|
| Q |
401 |
attaaaagcttacactcctc |
420 |
Q |
| |
|
| ||| || |||||||||| |
|
|
| T |
26510262 |
agtaattgcctacactcctc |
26510243 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 356 - 579
Target Start/End: Original strand, 34352613 - 34352854
Alignment:
| Q |
356 |
cattgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgcc |
455 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||| |||| || ||||||||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
34352613 |
cattgccacctgtcataaatatcagactgcaaaacgacaccattagttaattgcctacactcctctagcatctcctcctcccacaccctcaacctacgcc |
34352712 |
T |
|
| Q |
456 |
gccaattcgacgcctctccat------------------caaccatatcagctaccgtgctcaacttattagacactaaattaaatagacgacggaacct |
537 |
Q |
| |
|
||| | |||||||||| | ||||||||| |||||| ||||||| |||||||||| |||| | |||||| ||||| ||||| |
|
|
| T |
34352713 |
tccagccccacgcctctccgtcaacctccccaccaagggcaaccatattagctactgtgctcagcttattagacgctaagtcaaataggcgacgcaacct |
34352812 |
T |
|
| Q |
538 |
gatacaaaaaggaacatcactcagccacctgtcataccaaaa |
579 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||| |
|
|
| T |
34352813 |
gatacaaaaaggaacatcaccaagccacctgtcatatcaaaa |
34352854 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 3545047 - 3544964
Alignment:
| Q |
360 |
gccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||| |||| ||| |||||||||||||||| |
|
|
| T |
3545047 |
gccacctgtcagaaatatcagactgcaaaacaacaccattaagtaattgcctacactcttctaccaactcctcctcccacaccc |
3544964 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 1 - 108
Target Start/End: Original strand, 33150830 - 33150937
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||||||||||||||| || |||||||||||||| |||||| |||||| || ||||||||| | |||||||| || || || |||||| |
|
|
| T |
33150830 |
aatgaaatggtcatcaatattaagggggtcggcacctgacattccgatccaagacctgataagatgccacaatgagccaaaagtggcgcagtgaataaat |
33150929 |
T |
|
| Q |
101 |
aaatgaga |
108 |
Q |
| |
|
|||||||| |
|
|
| T |
33150930 |
aaatgaga |
33150937 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 349 - 443
Target Start/End: Complemental strand, 1248542 - 1248448
Alignment:
| Q |
349 |
ggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
|||||| || ||||||||||||||||||||| | |||||||| |||||||||| ||| || |||||||||||| || ||||||||||| |||| |
|
|
| T |
1248542 |
ggagtcccagtgccacctgtcagaaatatcaaattgcaaaacaacaccattaagtaattgcctacactcctctaacagctcctcctcccataccc |
1248448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 540 - 579
Target Start/End: Original strand, 5808973 - 5809012
Alignment:
| Q |
540 |
tacaaaaaggaacatcactcagccacctgtcataccaaaa |
579 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
5808973 |
tacaaaaaggaacatcaccaagccacctgtcataccaaaa |
5809012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 52691665 - 52691756
Alignment:
| Q |
359 |
tgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacct |
450 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | | |||||| | | || |||||||||| | ||| |||||||||||| ||| |||||| |
|
|
| T |
52691665 |
tgccacctgtcagaaatgtcagtctgcaaaacaaaatcattaagaagatgcctacactcctccaccaactcctcctcccacgcccataacct |
52691756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 184 - 245
Target Start/End: Original strand, 5808740 - 5808801
Alignment:
| Q |
184 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggca |
245 |
Q |
| |
|
|||||||||||||||||| || || ||||| | ||||||||| || |||||||| ||||||| |
|
|
| T |
5808740 |
attcttagtcggcaacctgtctcgcaacaaccgccaagcaaagatagaaacctttagcggca |
5808801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 50730085 - 50730133
Alignment:
| Q |
212 |
aatctccaagcaaaaatggaaaccttaagcggcacctgattatgccaga |
260 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| ||||| || ||||||| |
|
|
| T |
50730085 |
aatctccaagcaaaaatggacaccttcagcggtacctgtttgtgccaga |
50730133 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 460; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 584
Target Start/End: Complemental strand, 43517035 - 43516452
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
43517035 |
aatgaaatggtcatcaatattaaggggatcagcacctgacattccaatccaacacctgataaaatgccacaaagtaccgaaagtagcacaatgtataaat |
43516936 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
|||||||||||||||| | |||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
43516935 |
aaatgagaaacagactatgtcatgccgcacccagtaacacacaatgctacctcgccaacgatgatgccacgccggaggagatgattcttagtcggcaacc |
43516836 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagc |
300 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||||||||||||||| |
|
|
| T |
43516835 |
tatcccataacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataagatctccaatggtagcatctggaggttgaacctgagc |
43516736 |
T |
|
| Q |
301 |
tgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccatta |
400 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
43516735 |
tgtcggttgttgatagacacctctcaccgtgtaaccgcaatcagaatcaaagtcccattgccacctctcagaaatatcagactgcaaaacgacaccatta |
43516636 |
T |
|
| Q |
401 |
attaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccgtgctca |
500 |
Q |
| |
|
|||||| || ||||||||||||||| |||||||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
43516635 |
attaaatgcctacactcctctagcatatcctcctcccacaccctcaacctacgccgccaactccacgcctctccatcaaccatatcagctaccgtgctca |
43516536 |
T |
|
| Q |
501 |
acttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag |
584 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||| |||| |
|
|
| T |
43516535 |
acttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcaccaagccacttgtcataccaaaagtaag |
43516452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 20543920 - 20544362
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||||||||||| ||| ||||||||||||||||| |||||| |||||| || ||||||||| | ||||||||| || || || |||||| |
|
|
| T |
20543920 |
aatgaaatggtcatcaatattaaaggggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaat |
20544019 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
|||||||| || ||| |||| || ||||| || ||||||| || |||||| |||| |||||||||| ||||| || |||||||||||||||| |
|
|
| T |
20544020 |
aaatgagatgtagtctcttccataccgcaccctgtgacacacatacttgtctcgccgttgattatgccacgccttagaagatggttcttagtcggcaacc |
20544119 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctcc-aatggaagcatctagaggttgaacctgag |
299 |
Q |
| |
|
|||| || || |||| ||||| ||||||||||||||| ||||||||||| |||||||| ||||| ||||| || |||| | ||| |||||| |||||| |
|
|
| T |
20544120 |
tatctcgcaataatcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccatataagatctcccaaaggaa-cgtctggaggttccgcctgag |
20544218 |
T |
|
| Q |
300 |
ctgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccatt |
399 |
Q |
| |
|
||| || || |||||||| |||| ||| | ||||| | | ||||||| ||||| ||||| |||||||||| ||||| | ||||||| |||||||||| |
|
|
| T |
20544219 |
ttgtaagatgatgatagacgcctcccacactataaccaccaacagaatcagagtcccattgtcacctgtcagtaatattatgctgcaaa-cgacaccatt |
20544317 |
T |
|
| Q |
400 |
aattaaaagcttacactcctctagcaaatcctcctcccacaccct |
444 |
Q |
| |
|
|||||||| | |||||||||||| || |||||||||||| |||| |
|
|
| T |
20544318 |
aattaaaaacctacactcctctaacatctcctcctcccacgccct |
20544362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 411 - 449
Target Start/End: Complemental strand, 54483054 - 54483016
Alignment:
| Q |
411 |
tacactcctctagcaaatcctcctcccacacccttaacc |
449 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||| |
|
|
| T |
54483054 |
tacactcctctaccaaatcctcctcccacacccataacc |
54483016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 203 - 239
Target Start/End: Original strand, 38295784 - 38295820
Alignment:
| Q |
203 |
tcccgtaacaatctccaagcaaaaatggaaaccttaa |
239 |
Q |
| |
|
||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
38295784 |
tcccgtaacaacctccaagcaaaaatggaaactttaa |
38295820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 417; Significance: 0; HSPs: 8)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 12 - 584
Target Start/End: Complemental strand, 40514000 - 40513428
Alignment:
| Q |
12 |
catcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaac |
111 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| || |
|
|
| T |
40514000 |
catcaatattaaggggatcagcacatgacattccaatccaacacctgacaaaatgccataaagtaccaaaagtaggacaatgtagaaataaatgagagac |
40513901 |
T |
|
| Q |
112 |
agactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaac |
211 |
Q |
| |
|
|||||| |||||||||||||| | |||||||||||||||||| || | |||||| |||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
40513900 |
agactctgccatgccacacccggaaacacacaatgctgcctcaccgacgatgataccacgccgaagaaggtgattcttagtcggcaacctatcccgtaac |
40513801 |
T |
|
| Q |
212 |
aatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagctgtcagttgtt |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |||| ||||||| |
|
|
| T |
40513800 |
aatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtcgccaatggaagcatctggaggttgaacctgaactgtaagttgtt |
40513701 |
T |
|
| Q |
312 |
gatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagctt |
411 |
Q |
| |
|
||||| || | ||||||||||||||| |||| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||| | |
|
|
| T |
40513700 |
gataggcatcgctcaccgtgtaaccgtaatccgtatcggagtcccattgccacctgtcagaaatatcatactgcaaaacgacaccattaattaacagcct |
40513601 |
T |
|
| Q |
412 |
acactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaaccatatcagctaccgtgctcaacttattagac |
511 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||||||| |||||||||||||| |||| |
|
|
| T |
40513600 |
acactcctctagcatatcctcctcccacacccttaacctacgccgccaattccacccctctccagcaaccatatcagctatcgtgctcaacttatcagac |
40513501 |
T |
|
| Q |
512 |
actaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaactaag |
584 |
Q |
| |
|
||||||||||| || ||||||||||||||||| ||||||||||||| |||||| |||||||||||||| |||| |
|
|
| T |
40513500 |
actaaattaaaaagtcgacggaacctgatacagaaaggaacatcacccagccatctgtcataccaaaagtaag |
40513428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 126; E-Value: 1e-64
Query Start/End: Original strand, 1 - 450
Target Start/End: Original strand, 34829254 - 34829703
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||||||||||| ||| | | ||||||||||||| |||||| |||||| | ||||||||| |||| ||||| |||||||| ||||| |
|
|
| T |
34829254 |
aatgaaatggtcatcaatattaaaggggttaacacctgacattccgatccaagacctgatatgatgccacaatgtactgaaagtggcacaatgaataaac |
34829353 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
|| |||| ||||||| || |||| ||||| |||||||||| || | ||| || |||| | ||||| | ||||| | ||||||| ||| ||||| |
|
|
| T |
34829354 |
aagtgaggcgcagactcttccttgccgcaccctgtaacacacataactacttcggcattgattactccacgtcttagaagattattcttaatcgacaacc |
34829453 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagc |
300 |
Q |
| |
|
| ||||| ||||| | ||||||||| ||||| ||||| ||| ||||||| |||||||||||||| ||||| || | | ||| | |||| | | |||||| |
|
|
| T |
34829454 |
tgtcccgcaacaaccgccaagcaaagatggagaccttcagcagcacctgcttatgccagataagatctcccatagtaccatatggaggatcagcctgagt |
34829553 |
T |
|
| Q |
301 |
tgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccatta |
400 |
Q |
| |
|
| ||||||||||||||||||||||||| |||||||| | |||| |||| ||||| ||||||||||||||||||| ||||||||||||||| ||||||||| |
|
|
| T |
34829554 |
tttcagttgttgatagacacctctcacagtgtaaccaccatcaaaatcagagtcccattgccacctgtcagaaagatcagactgcaaaacaacaccatta |
34829653 |
T |
|
| Q |
401 |
attaaaagcttacactcctctagcaaatcctcctcccacacccttaacct |
450 |
Q |
| |
|
| ||| | ||||||||||||||| ||||||||||||| ||| ||||| |
|
|
| T |
34829654 |
agtaatttcctacactcctctagcatctcctcctcccacagcctcaacct |
34829703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 31675124 - 31675207
Alignment:
| Q |
360 |
gccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||| ||| |||||||||||||||| |
|
|
| T |
31675124 |
gccacctgtcagaaatatcagactgcaaaaccacaccattaagtaatttcctacactcctctaccaactcctcctcccacaccc |
31675207 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 31921296 - 31921213
Alignment:
| Q |
360 |
gccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| | |||||||||||| ||| |||||||||||||||| |
|
|
| T |
31921296 |
gccacctgtcagaaatatcagactgcaaaaccacaccattaagtaatttcctacactcctctaccaactcctcctcccacaccc |
31921213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 18368850 - 18368801
Alignment:
| Q |
411 |
tacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa |
460 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
18368850 |
tacactcctctagcaaagcctcctcccacacccacaacctacgccgccaa |
18368801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 503 - 579
Target Start/End: Original strand, 34829774 - 34829850
Alignment:
| Q |
503 |
ttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcataccaaaa |
579 |
Q |
| |
|
||||||||||||| || ||||| ||||| ||||| |||||||||| ||||||| |||||||||||||||||||| |
|
|
| T |
34829774 |
ttattagacactagatcaaataaccgacgaaacctagtacaaaaagggacatcaccaagccacctgtcataccaaaa |
34829850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 31921457 - 31921386
Alignment:
| Q |
199 |
cctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctcc |
270 |
Q |
| |
|
||||||||||| ||| |||||||| | |||||||||||| | || ||||| |||||||||| ||||||||| |
|
|
| T |
31921457 |
cctatcccgtagcaaactccaagccataatggaaaccttcaaaggaacctgcttatgccagacaaggtctcc |
31921386 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 33121435 - 33121362
Alignment:
| Q |
188 |
ttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagat |
261 |
Q |
| |
|
||||| ||||| ||||| || | ||| ||||||||||| | ||||||||| | |||||||||| |||||||||| |
|
|
| T |
33121435 |
ttagtaggcaatctatcacgaagcaacctccaagcaaataaggaaaccttcaacggcacctgactatgccagat |
33121362 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 212; Significance: 1e-116; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 35213468 - 35213731
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||| |
|
|
| T |
35213468 |
aatgaaatggtcatcaatattaaggggatcaacacctgacattccaatccaacacctgacaaaatgccacaaagtaacgaaagtagcacaatgtataaat |
35213567 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
35213568 |
aaatgggaaacagactctgccatgccgcacccagtaacacacaatgctgcctcgccaacaatgatgccatgccggagaaggtgattcttagtcggcaacc |
35213667 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
264 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
35213668 |
tatcccgtaacaatcttcaagcaaaaatggaaaccttaagcggcacttgattatgccagataag |
35213731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 1 - 444
Target Start/End: Original strand, 26855548 - 26855991
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| ||| |||||||| || ||||||||||||||||| ||| || |||||| || ||||||||||| ||||||||| | ||||| ||||| |
|
|
| T |
26855548 |
aatgaaatggtcattaatattaaaagggtcagcacctgacattccgatcaaagacctgataagatgccacaaagaaccaaaagtggtgcaatgaataaaa |
26855647 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
| |||||| || ||| |||| || ||||| || ||||||| ||||||| |||| |||||||||| | ||| ||||||||||||||||||| |
|
|
| T |
26855648 |
agatgagatgtagtctcttccataccgcaccctgtgacacacatacaagcctcgctgttgattatgccacgcctaaaaagatgattcttagtcggcaacc |
26855747 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtct-ccaatggaagcatctagaggttgaacctgag |
299 |
Q |
| |
|
|||| || || |||| ||||||||||||||||||||| ||||||||||| |||||||| ||||||||| |||| |||| | ||| |||||| | | |||| |
|
|
| T |
26855748 |
tatcacgcaataatcgccaagcaaaaatggaaaccttgagcggcacctgcttatgccatataaggtctcccaaaggaa-cgtctggaggttcagcttgag |
26855846 |
T |
|
| Q |
300 |
ctgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccatt |
399 |
Q |
| |
|
||| || || |||||| | |||| ||| | ||||||| | || |||| ||||| |||||||||||||| || |||| | |||||||| ||||||||| |
|
|
| T |
26855847 |
ttgtaagatgatgataggcgcctcccacactataaccgccaccataatccgagtcccattgccacctgtcggagatattatgctgcaaaatgacaccatt |
26855946 |
T |
|
| Q |
400 |
aattaaaagcttacactcctctagcaaatcctcctcccacaccct |
444 |
Q |
| |
|
|||||||||| |||||||||||| || |||||||||||| |||| |
|
|
| T |
26855947 |
aattaaaagcctacactcctctaacagctcctcctcccacgccct |
26855991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 184 - 255
Target Start/End: Original strand, 44433425 - 44433496
Alignment:
| Q |
184 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatg |
255 |
Q |
| |
|
|||||| || || ||||| || || |||||||||||||||||||| || ||||| ||||| ||||||||||| |
|
|
| T |
44433425 |
attcttggttggtaacctgtcacgcaacaatctccaagcaaaaatagacaccttcagcggtacctgattatg |
44433496 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 188 - 258
Target Start/End: Original strand, 4077297 - 4077367
Alignment:
| Q |
188 |
ttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgcca |
258 |
Q |
| |
|
||||| ||||| ||||| || | ||| |||||||||||||| |||||||| | ||||||||| |||||||| |
|
|
| T |
4077297 |
ttagtaggcaatctatcacgaagcaacctccaagcaaaaatagaaaccttcaacggcacctggttatgcca |
4077367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 435
Target Start/End: Complemental strand, 8753335 - 8753259
Alignment:
| Q |
359 |
tgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctc |
435 |
Q |
| |
|
||||||||||||||||||||||| |||||||| | ||| | || ||| ||| |||||||| ||| || |||||||| |
|
|
| T |
8753335 |
tgccacctgtcagaaatatcagaatgcaaaacaaaaccgtcaagtaagagcctacactccactaccatgtcctcctc |
8753259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 3e-90; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 3e-90
Query Start/End: Original strand, 1 - 481
Target Start/End: Original strand, 11196186 - 11196666
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| |||||||||||||| | || |||||||||||| |||||| |||||| || ||||||||| | ||||||||| || || || |||||| |
|
|
| T |
11196186 |
aatgaaatggtcatcaatattaaggaggtcgacacctgacattctgatccaagacctgataagatgccacaatgaaccaaaagtggcgcagtgaataaat |
11196285 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacc |
200 |
Q |
| |
|
|||||||| || ||| ||||| || ||||| |||||||||| ||||||||||| |||| |||||||||| ||||| || |||||||||||||||| |
|
|
| T |
11196286 |
aaatgagacgcaatctctgccataccgcaccctgtaacacacataactgcctcgccattgattatgccacgccttagaagatggttcttagtcggcaacc |
11196385 |
T |
|
| Q |
201 |
tatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatctagaggttgaacctgagc |
300 |
Q |
| |
|
|||| || ||||||| ||||| ||||||||||||||| ||||||||||| |||||||||||||| ||||| || | | ||||| |||||| | |||||| |
|
|
| T |
11196386 |
tatctcgcaacaatcgccaagtaaaaatggaaaccttcagcggcacctgcttatgccagataagatctcctatagtaacatctggaggttcagcctgagt |
11196485 |
T |
|
| Q |
301 |
tgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccatta |
400 |
Q |
| |
|
|| || || |||||||| |||| ||| ||||||| | | ||||||| ||||| |||||||||||||||||||||| | ||||||||||||||||||| |
|
|
| T |
11196486 |
agtaaggtgatgatagacgcctcccacactgtaaccaccagcagaatcagagtcccattgccacctgtcagaaatattatgctgcaaaacgacaccatta |
11196585 |
T |
|
| Q |
401 |
attaaaagcttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaattcgacgcctctccatcaacc |
481 |
Q |
| |
|
||||| || ||||||||||||||| ||||||||||||||||| ||| | |||| |||| | |||||||||| |||||| |
|
|
| T |
11196586 |
attaattgcctacactcctctagcatctcctcctcccacaccctcaacattcgcctccaaccccacgcctctccgtcaacc |
11196666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 29 - 263
Target Start/End: Original strand, 32624217 - 32624451
Alignment:
| Q |
29 |
tcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacagactcagccatgccac |
128 |
Q |
| |
|
|||||||||||||||||||||||| |||||| || ||||||||| | ||||||||| || ||||| |||||||||||||| || ||| |||| || | |
|
|
| T |
32624217 |
tcagcacctgacattccaatccaagacctgataagatgccacaatgaaccaaaagtggcgcaatgaataaataaatgagatgtagtctcttccataccgc |
32624316 |
T |
|
| Q |
129 |
acccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaatctccaagcaaaaat |
228 |
Q |
| |
|
| || || ||||||| ||||||||| |||| |||||||||| ||||| || |||||||||||||||||||| | || |||| |||| ||||||| |
|
|
| T |
32624317 |
atcctgtgacacacatacatgcctcgccgttgattatgccacgccttagaagatggttcttagtcggcaacctatctctcaataatcgccaaacaaaaat |
32624416 |
T |
|
| Q |
229 |
ggaaaccttaagcggcacctgattatgccagataa |
263 |
Q |
| |
|
||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
32624417 |
ggaaaccttcagcggcacctgcttatgccatataa |
32624451 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 29 - 84
Target Start/End: Complemental strand, 144301 - 144246
Alignment:
| Q |
29 |
tcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagt |
84 |
Q |
| |
|
||||||||||||||||| |||||| |||||| || ||||||||||| ||||||||| |
|
|
| T |
144301 |
tcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagt |
144246 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 477 - 572
Target Start/End: Original strand, 11196680 - 11196775
Alignment:
| Q |
477 |
caaccatatcagctaccgtgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcat |
572 |
Q |
| |
|
||||||||||||| ||||| |||| ||||||||| |||| | ||||| || |||||||||| ||||||||||| ||||| |||||||| |||| |
|
|
| T |
11196680 |
caaccatatcagccaccgtactcagtttattagacgctaagtcaaataaacaacggaacctggtacaaaaaggagtatcaccaagccacctatcat |
11196775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 411 - 460
Target Start/End: Original strand, 35488082 - 35488131
Alignment:
| Q |
411 |
tacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa |
460 |
Q |
| |
|
||||||||||||||||| ||||||||||| ||| ||||||||||||||| |
|
|
| T |
35488082 |
tacactcctctagcaaagcctcctcccacgcccacaacctacgccgccaa |
35488131 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 460
Target Start/End: Complemental strand, 8066121 - 8066072
Alignment:
| Q |
411 |
tacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa |
460 |
Q |
| |
|
||||||||||||||| | ||||||||||| ||| ||||||||||||||| |
|
|
| T |
8066121 |
tacactcctctagcatagcctcctcccacgcccacaacctacgccgccaa |
8066072 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 365 - 401
Target Start/End: Original strand, 7300874 - 7300910
Alignment:
| Q |
365 |
ctgtcagaaatatcagactgcaaaacgacaccattaa |
401 |
Q |
| |
|
|||||||||| ||||||||||||||| |||||||||| |
|
|
| T |
7300874 |
ctgtcagaaacatcagactgcaaaacaacaccattaa |
7300910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 359 - 439
Target Start/End: Complemental strand, 18844580 - 18844500
Alignment:
| Q |
359 |
tgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccac |
439 |
Q |
| |
|
||||||||||||||||| ||||||| |||||| | | |||||| | | || |||||||||| | ||| |||||||||||| |
|
|
| T |
18844580 |
tgccacctgtcagaaatgtcagactacaaaacaaaatcattaagaagatgcctacactcctccaccaactcctcctcccac |
18844500 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 3e-34; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 184 - 450
Target Start/End: Original strand, 9510800 - 9511066
Alignment:
| Q |
184 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatct |
283 |
Q |
| |
|
||||||||||| |||||| || || ||||| | |||||||| || |||||||| | ||||||||| |||||||||||||| ||||| | | | ||||| |
|
|
| T |
9510800 |
attcttagtcgacaacctgtctcgcaacaaccgtcaagcaaagatagaaacctttaacggcacctgcttatgccagataagatctcccgtagtaacatct |
9510899 |
T |
|
| Q |
284 |
agaggttgaacctgagctgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagact |
383 |
Q |
| |
|
|||| | | | || | ||||||||||| ||||||||||||||| |||||||| | ||||||| | ||||| || |||| |||||| |||||| || || |
|
|
| T |
9510900 |
tgaggatcagcttgcgttgtcagttgttcatagacacctctcacagtgtaaccaccatcagaaacagagtcccaaagccatctgtcaaaaatattaggct |
9510999 |
T |
|
| Q |
384 |
gcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacct |
450 |
Q |
| |
|
||||||| |||||||||| || || |||||||||||| || ||||||||||||||||| ||||| |
|
|
| T |
9511000 |
gcaaaacaacaccattaagcaattgcctacactcctctaacatctcctcctcccacaccctcaacct |
9511066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 184 - 450
Target Start/End: Original strand, 6245145 - 6245411
Alignment:
| Q |
184 |
attcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctccaatggaagcatct |
283 |
Q |
| |
|
|||||||||| |||||||||| || | ||||| ||||||||| || |||||||| || |||||||| |||||||| ||||| ||||| | | | ||||| |
|
|
| T |
6245145 |
attcttagtcagcaacctatctcgcatcaatcgccaagcaaagatagaaacctttagtggcacctgcttatgccaaataagatctcccgtagtaacatct |
6245244 |
T |
|
| Q |
284 |
agaggttgaacctgagctgtcagttgttgatagacacctctcaccgtgtaaccgcaatcagaatcggagtctcattgccacctgtcagaaatatcagact |
383 |
Q |
| |
|
|||| | |||| ||||||||||| ||||||||||||||| |||||||| | ||||||| | || || || ||||| ||||||||||||||| | |
|
|
| T |
6245245 |
tgaggaacagcctgcattgtcagttgttcatagacacctctcacagtgtaaccaccatcagaaacagaatcccaaagccacttgtcagaaatatcaggcg |
6245344 |
T |
|
| Q |
384 |
gcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacct |
450 |
Q |
| |
|
||||||| |||||||||| ||| | ||||||| |||| || ||||||||||||||||| ||||| |
|
|
| T |
6245345 |
gcaaaacaacaccattaagtaattacctacactcatctaacatctcctcctcccacaccctcaacct |
6245411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 3939248 - 3939319
Alignment:
| Q |
199 |
cctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataaggtctcc |
270 |
Q |
| |
|
||||||||||||||| |||||||| |||||||||||| | || ||||| |||||||||| ||||||||| |
|
|
| T |
3939248 |
cctatcccgtaacaaatgccaagcaagaatggaaaccttcaaaggaacctgcttatgccagacaaggtctcc |
3939319 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 359 - 437
Target Start/End: Original strand, 25193282 - 25193360
Alignment:
| Q |
359 |
tgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctccc |
437 |
Q |
| |
|
||||||||||||||||| |||||||||||||| | | |||||| | | || |||||||||| | ||| |||||||||| |
|
|
| T |
25193282 |
tgccacctgtcagaaatgtcagactgcaaaacaaaatcattaagaagatgcctacactcctccaccaactcctcctccc |
25193360 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 15439189 - 15439266
Alignment:
| Q |
187 |
cttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
264 |
Q |
| |
|
|||||| |||| ||| ||||| ||||||| ||||||||||||||| ||||| | || ||||| |||||||| ||||| |
|
|
| T |
15439189 |
cttagttggcagcctgtcccgcaacaatcgccaagcaaaaatggagaccttcatgggtacctgtttatgccacataag |
15439266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 187 - 264
Target Start/End: Original strand, 15530493 - 15530570
Alignment:
| Q |
187 |
cttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
264 |
Q |
| |
|
|||||| |||| ||| ||||| ||||||| ||||||||||||||| ||||| | || ||||| |||||||| ||||| |
|
|
| T |
15530493 |
cttagttggcagcctgtcccgcaacaatcgccaagcaaaaatggagaccttcatgggtacctgtttatgccacataag |
15530570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 25900869 - 25900925
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacct |
57 |
Q |
| |
|
||||| |||| |||||||||||| ||| ||| ||||||||||||| |||||| |||| |
|
|
| T |
25900869 |
aatgaaatggtcatcaatattaaaggggtcaacacctgacattccgatccaagacct |
25900925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 8)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 29 - 270
Target Start/End: Complemental strand, 14687285 - 14687044
Alignment:
| Q |
29 |
tcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaataaatgagaaacagactcagccatgccac |
128 |
Q |
| |
|
||||||||||||||||| |||||| |||||| || ||||||||||| ||||||||| | ||||| ||||| | |||||| || ||| ||| || | |
|
|
| T |
14687285 |
tcagcacctgacattccgatccaagacctgataagatgccacaaagaaccaaaagtggtgcaatgaataaaaagatgagatgtagtctcttccacaccgc |
14687186 |
T |
|
| Q |
129 |
acccagtaacacacaatgctgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaacctatcccgtaacaatctccaagcaaaaat |
228 |
Q |
| |
|
|||| || ||||||| |||| | |||| |||||||||| | ||| ||||||||||||||||||||||| || || |||| |||||||||||| |
|
|
| T |
14687185 |
accctgtgacacacatacaaacctcactgttgattatgccacgcctaaaaagatgattcttagtcggcaacctatcacgcaataatcgccaagcaaaaat |
14687086 |
T |
|
| Q |
229 |
ggaaaccttaagcggcacctgattatgccagataaggtctcc |
270 |
Q |
| |
|
||||||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
14687085 |
ggaaaccttaagcggcacctgcttatgccatataaggtctcc |
14687044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 14844083 - 14844000
Alignment:
| Q |
360 |
gccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| || ||||||| |||| ||| |||||||||||||||| |
|
|
| T |
14844083 |
gccacctgtcagaaatatcagactgcaaaacaacaccattaagtaattgcctacactcttctaccaactcctcctcccacaccc |
14844000 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 350 - 444
Target Start/End: Complemental strand, 14686964 - 14686870
Alignment:
| Q |
350 |
gagtctcattgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccct |
444 |
Q |
| |
|
||||| ||||||||||||||||| |||| | |||||||| ||||||||||||||||| | |||||||||||| || || ||||||||| |||| |
|
|
| T |
14686964 |
gagtcccattgccacctgtcagagatattatgctgcaaaatgacaccattaattaaaaccctacactcctctaacagctcatcctcccacgccct |
14686870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 476 - 584
Target Start/End: Complemental strand, 14686820 - 14686712
Alignment:
| Q |
476 |
tcaaccatatcagctaccgtgctcaacttattagacactaaattaaatagacgacggaacctgatacaaaaaggaacatcactcagccacctgtcatacc |
575 |
Q |
| |
|
|||||||||||||| || |||||||| |||||||| |||||| ||| | ||||||||| || |||||||||| ||||| |||||||||||||||| |
|
|
| T |
14686820 |
tcaaccatatcagccacagtgctcaatttattagatgctaaatcaaacaaacgacggaatctagtacaaaaaggtgtatcaccaagccacctgtcatacc |
14686721 |
T |
|
| Q |
576 |
aaaactaag |
584 |
Q |
| |
|
|||| |||| |
|
|
| T |
14686720 |
aaaagtaag |
14686712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 26513744 - 26513816
Alignment:
| Q |
186 |
tcttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgcca |
258 |
Q |
| |
|
|||| ||||||||||||||||| ||||| ||||||||||||||||||||| || || ||||| |||||||| |
|
|
| T |
26513744 |
tcttggtcggcaacctatcccgcaacaactgccaagcaaaaatggaaacctttagaggaacctgcttatgcca |
26513816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 409 - 460
Target Start/End: Complemental strand, 23065944 - 23065893
Alignment:
| Q |
409 |
cttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa |
460 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||| |||||||||| |
|
|
| T |
23065944 |
cttacactcctctagcaaatcctcctcccacgcccacaaccgacgccgccaa |
23065893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 359 - 450
Target Start/End: Original strand, 25350416 - 25350507
Alignment:
| Q |
359 |
tgccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacacccttaacct |
450 |
Q |
| |
|
||||||||||||||||| |||| ||||||||| | | |||||| | |||| |||||||||| | ||| |||||||||||| ||| |||||| |
|
|
| T |
25350416 |
tgccacctgtcagaaatgtcagtctgcaaaacaaaatcattaagaagaagcctacactcctccaccaactcctcctcccacgcccataacct |
25350507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 409 - 460
Target Start/End: Original strand, 9565610 - 9565661
Alignment:
| Q |
409 |
cttacactcctctagcaaatcctcctcccacacccttaacctacgccgccaa |
460 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||||||||| |||| |
|
|
| T |
9565610 |
cttacactcctctagcaaagcctcctcccacgcccacaacctacgcctccaa |
9565661 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 21368223 - 21367960
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacattccaatccaacacctgacaaaatgccacaaagtaccaaaagtagcacaatgtataaat |
100 |
Q |
| |
|
||||| |||| ||||||||||||| || ||||||||||||||||| |||||| |||||| || ||||||||| | ||||||||| || ||||| ||||| |
|
|
| T |
21368223 |
aatgaaatggtcatcaatattaagagggtcagcacctgacattccgatccaagacctgataagatgccacaatgaaccaaaagtggcgcaatgaataaaa |
21368124 |
T |
|
| Q |
101 |
aaatgagaaacagactcagccatgccacacccagtaacacacaatgc-tgcctcgccaatgatgatgccacgccggagaaggtgattcttagtcggcaac |
199 |
Q |
| |
|
| || ||| || ||| |||| || ||||| || ||||| | | | ||||||||| |||| |||||||||| || || || ||||||||||||||| |
|
|
| T |
21368123 |
agataagatgtagtctcttccataccgcaccctgtgacaca-attacatgcctcgccgttgattatgccacgccttaggagatggttcttagtcggcaac |
21368025 |
T |
|
| Q |
200 |
ctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagataag |
264 |
Q |
| |
|
||||| | || |||| ||||| ||||||||||||||| |||||||||| |||||||| ||||| |
|
|
| T |
21368024 |
ctatctctcaataatcgccaagaaaaaatggaaaccttcagcggcacctacttatgccatataag |
21367960 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 476407 - 476490
Alignment:
| Q |
360 |
gccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||| ||| || |||||||||||| ||| |||||||||||||||| |
|
|
| T |
476407 |
gccacctgtcagaaatatcagactgcaaaacaacaccattaagtaattgcctacactcctctaccaactcctcctcccacaccc |
476490 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 979392 - 979350
Alignment:
| Q |
1 |
aatgagatggacatcaatattaaggggatcagcacctgacatt |
43 |
Q |
| |
|
||||| |||| |||||||||||||||||||| ||||||||||| |
|
|
| T |
979392 |
aatgaaatggtcatcaatattaaggggatcaccacctgacatt |
979350 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 188 - 261
Target Start/End: Complemental strand, 4415818 - 4415745
Alignment:
| Q |
188 |
ttagtcggcaacctatcccgtaacaatctccaagcaaaaatggaaaccttaagcggcacctgattatgccagat |
261 |
Q |
| |
|
||||| ||||| ||||| || | ||| ||||||||||| | |||||||| | ||||||||||||||||||||| |
|
|
| T |
4415818 |
ttagtaggcaatctatcacgaagcaacctccaagcaaataaagaaaccttcaacggcacctgattatgccagat |
4415745 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0555 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0555
Description:
Target: scaffold0555; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 360 - 443
Target Start/End: Original strand, 7862 - 7945
Alignment:
| Q |
360 |
gccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||| |||||| ||| || |||||||||||| ||| |||||||||||||||| |
|
|
| T |
7862 |
gccacctgtcagaaatatcagactgcaaaacaacaacattaagtaattgcctacactcctctaccaactcctcctcccacaccc |
7945 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0043 (Bit Score: 52; Significance: 2e-20; HSPs: 1)
Name: scaffold0043
Description:
Target: scaffold0043; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 360 - 443
Target Start/End: Complemental strand, 34555 - 34472
Alignment:
| Q |
360 |
gccacctgtcagaaatatcagactgcaaaacgacaccattaattaaaagcttacactcctctagcaaatcctcctcccacaccc |
443 |
Q |
| |
|
||||||||||||||||||||||||| ||||| |||||||||| ||| || |||||||||||| ||| |||||||||||||||| |
|
|
| T |
34555 |
gccacctgtcagaaatatcagactgtaaaacaacaccattaagtaattgcctacactcctctaccaactcctcctcccacaccc |
34472 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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