View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9111_low_5 (Length: 302)
Name: NF9111_low_5
Description: NF9111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9111_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-144; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-144
Query Start/End: Original strand, 1 - 285
Target Start/End: Original strand, 26916954 - 26917236
Alignment:
| Q |
1 |
tttttatttctactatcaactttgttaatttttatcatttactcaacaaaatgcaatatttaaaaatggagcattaatcaagaaacagatggagtaattc |
100 |
Q |
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| T |
26916954 |
tttttattactactatcaactttgttaatttttatcatttactcaacaaaatgcaatatttaagaatggagcattaatcaagaaacagatggagtaattc |
26917053 |
T |
|
| Q |
101 |
acacggttaagttaaatactgctcaaggttatggaaccaagtaagtatctgcacctgatcaatcttgtactgcttaaagatgatattttatcgagatgtt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26917054 |
acacggttaagttaaatactgctcaaggttatggaaccaagtaagtatctgcacctgatcaatcttgtactgcttaaagatgatattttatcgagatgtt |
26917153 |
T |
|
| Q |
201 |
aataagtctatagtagaaagaacatgcacttaattgactcacaataataatagtaacttatgaaacacaaataccgacacgaaaa |
285 |
Q |
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|||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
26917154 |
aataagtc--tagtagaaagaacatgcacttaattgactcataataataatagtaacttatgaaacacaaatacccacacgaaaa |
26917236 |
T |
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