View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9111_low_7 (Length: 216)
Name: NF9111_low_7
Description: NF9111
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9111_low_7 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 2707407 - 2707603
Alignment:
| Q |
1 |
tattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatctaaaaccttcttttttact |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2707407 |
tattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatctaaaaccttcttttttact |
2707506 |
T |
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| Q |
101 |
gggtctgcagaaacatcaaaaagtaaggcaatcataacacagtaaaatgtaactttcggtcactacataataatattttgaggtattcaaatgaaag |
197 |
Q |
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| T |
2707507 |
gggtctgcagaaacatcaaaaagtaaggcaatcataacacagtaaaatgtaactttcggtcactacataataatattttgaggtattcaaatgaaag |
2707603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 107
Target Start/End: Original strand, 2717177 - 2717283
Alignment:
| Q |
1 |
tattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatctaaaaccttcttttttact |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| || ||||||||||||||||||||| ||| ||||||| ||||||||||| ||||||||||| | |
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| T |
2717177 |
tattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccttcaattatgtataagcgtttttgccaatctaaaatcttcttttttatt |
2717276 |
T |
|
| Q |
101 |
gggtctg |
107 |
Q |
| |
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|| |||| |
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| T |
2717277 |
ggatctg |
2717283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2723799 - 2723915
Alignment:
| Q |
1 |
tattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatctaaaaccttcttttttact |
100 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||||| ||||||||||| ||||||||||| | |
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| T |
2723799 |
tattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccctcaattatgtataagcgtttttgccaatctaaaatcttcttttttatt |
2723898 |
T |
|
| Q |
101 |
gggtctgcagaaacatc |
117 |
Q |
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|| |||| ||| ||||| |
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| T |
2723899 |
ggatctgtagagacatc |
2723915 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 2712653 - 2712761
Alignment:
| Q |
1 |
tattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatctaaaaccttcttttttact |
100 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||| ||| ||| ||| ||||||||||| |||||||||||| |
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| T |
2712653 |
tattcttaatcttgaatctcgatgaagataaagcaatcctcgagagattccctcaattatgtgtaagcgtctttgccaatctaaaatcttcttttttacg |
2712752 |
T |
|
| Q |
101 |
gggtctgca |
109 |
Q |
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| ||||||| |
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|
| T |
2712753 |
gagtctgca |
2712761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 2745629 - 2745745
Alignment:
| Q |
1 |
tattcttaatcttgaatctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatctaaaaccttcttttttact |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| || ||||||||||| ||||||||| ||| ||||||| ||||||||||| ||| ||||||| | |
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|
| T |
2745629 |
tattcttaatctcgaatctctatgaagataaagcagtccgcgagagattccctcaattatgtataagcgtttttgccaatctaaaatcttattttttatt |
2745728 |
T |
|
| Q |
101 |
gggtctgcagaaacatc |
117 |
Q |
| |
|
|| |||| ||| ||||| |
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|
| T |
2745729 |
ggatctgtagagacatc |
2745745 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 85
Target Start/End: Original strand, 4159995 - 4160063
Alignment:
| Q |
17 |
tctctatgaagataaagcagacctcgagagattccttcaattatggttaaacgttttttccaatctaaa |
85 |
Q |
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||||||||||||||||| | |||||||| || |||||||||||| |||| || ||| ||||||||||| |
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| T |
4159995 |
tctctatgaagataaagtatacctcgagctatgccttcaattatgtttaaccgctttctccaatctaaa |
4160063 |
T |
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