View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_high_1 (Length: 672)
Name: NF9112_high_1
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 270; Significance: 1e-150; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 1 - 374
Target Start/End: Complemental strand, 31472349 - 31471976
Alignment:
| Q |
1 |
gtcgaattaatactcaaagaacagcaaatgtaccttaaatctaaaactcctctcaccaccacagaagaggggatcgtaggaattgtattcaccgcgactc |
100 |
Q |
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| T |
31472349 |
gtcgaattaatattcaaagaccagtaaaggtaccttaaatctaaaactcctctcaccaccacagaagagaggatcgtaggaattgttttcaccccgactc |
31472250 |
T |
|
| Q |
101 |
ctagagtacactgtggttttaattaaagtttcaaactgtaactttagcataataacgatgaaatcaaacattaaagtatatatccataaataaaaaatag |
200 |
Q |
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| T |
31472249 |
ctagactacactgtggttttaattgaagtttcaaattgtaactttagcataataatgatgaaatcaaacattaaagtatatatctataaa-aaaaaatag |
31472151 |
T |
|
| Q |
201 |
taagtgtatagaaatgggtcatatcattgaattgatgagggcaatgatctttttcattttgttttgtttatggaacccatgcgtcacattttgtcacttt |
300 |
Q |
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| T |
31472150 |
taagtgtatataaatgggtcatatcattgaattgatgagggcaatgatctttttcattttgtttt----atggaacccatgcgtcacattttgtcacttt |
31472055 |
T |
|
| Q |
301 |
gagaaatgtagacgtagaaaata-----gggtctttccttttccatttttgcagcaccccttaaagcagttactaagac |
374 |
Q |
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| T |
31472054 |
gagaaatgtagacgtagaaattaaaatggggtctttccttttccatttttgcagcaacccttaaagaagttactaagac |
31471976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 375 - 645
Target Start/End: Complemental strand, 31468097 - 31467821
Alignment:
| Q |
375 |
taaaatcaagcctctcaaagtggattccttaatataatggaggagaagatctttgttgttgcttagg-----tgattagttagaagctaatatgattgag |
469 |
Q |
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| T |
31468097 |
taaaatcaagcctctcaaaggggattccttaatataatggaggagaagatctttgttgttgcttaggtgaaatgattagttagaagctaatatgattgag |
31467998 |
T |
|
| Q |
470 |
ctaaattttttgttaaatgaatcaatgtgttacatgtgtgtgtgnnnnnnnnnnnnnggtagaaaatgtgttacatgtgtttctcatcattagaataatg |
569 |
Q |
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||||||||||||||||||||||||||||||| ||||||||| | |||||||||||||||||| ||||||||||||||||||||||| |
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| T |
31467997 |
ctaaattttttgttaaatgaatcaatgtgttgcatgtgtgttt-----tttttttttggtagaaaatgtgttacaagtgtttctcatcattagaataata |
31467903 |
T |
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| Q |
570 |
gatgtaaatagaaaaattgatttggtattggcaa-------gataatgatcataaatcatgataatcactgtgtgaatacaga |
645 |
Q |
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| T |
31467902 |
aatgtaaatagtaaaa-tgatttggtattggcaataactttgataatgatcataaatcatgataatcactgtgtgaatacaga |
31467821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 110; E-Value: 4e-55
Query Start/End: Original strand, 223 - 413
Target Start/End: Complemental strand, 31459615 - 31459424
Alignment:
| Q |
223 |
atcattgaattgatgagggcaatgatctttttcattttgttttgtttatggaacccatgcgtcacattttgtcactttgagaaatgtag----acgtaga |
318 |
Q |
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| T |
31459615 |
atcattgaattgatgagagcaatgatctttttcattc-gttttgtctacgcaacccatgcgtcacattttgtcactttgagaaatgtaagtacacgtaga |
31459517 |
T |
|
| Q |
319 |
aaatagggtctttccttttccatttttgcagcaccccttaaagcagttactaagactaaaatcaagcctctcaaagtggattccttaatataatg |
413 |
Q |
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| T |
31459516 |
aaatagggtctttccttttccctttttacggcaccccataa-gaagttac-aagactaaaatcaagcctctcaaagtggattccttaatataatg |
31459424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 442 - 626
Target Start/End: Complemental strand, 31458129 - 31457946
Alignment:
| Q |
442 |
tgattagttagaagctaatatgattgagctaa---attttttgttaaatgaatcaatgtgttacatgtgtgtgtgnnnnnnnnnnnnnggtagaaaatgt |
538 |
Q |
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|||||| ||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| | || |||||||||||| |
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| T |
31458129 |
tgattaattagaagctaatatgattgagctaattaatattttaataaatgaatcaatgtgttacatgtgttt-tgtttt---------ggtagaaaatgt |
31458040 |
T |
|
| Q |
539 |
gttacatgtgtttctcatcattagaataatggatgtaaatagaaaaattgatttggtattggcaa-------gataatgatcataaatcatgata |
626 |
Q |
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| T |
31458039 |
gttacatgtgtttctcatcattagaataatggatgtaaatagaaaaa-tgatttggtattggcaattactttgataatgatcataaatcatgata |
31457946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 32 - 104
Target Start/End: Complemental strand, 31459849 - 31459777
Alignment:
| Q |
32 |
accttaaatctaaaactcctctcaccaccacagaagaggggatcgtaggaattgtattcaccgcgactcctag |
104 |
Q |
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||||| || ||||| || |||||||| ||||||||||| ||| | |||| |||||||||||| |||||||||| |
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| T |
31459849 |
acctttaacctaaagcttctctcaccgccacagaagagaggaacataggtattgtattcaccccgactcctag |
31459777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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