View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_high_19 (Length: 238)
Name: NF9112_high_19
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_high_19 |
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Alignment Details
Target: chr4 (Bit Score: 178; Significance: 4e-96; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 6101261 - 6101501
Alignment:
| Q |
1 |
tttattgtagttgagttatgggtcaaacacaaacttacaaattactaagaccagtcatatattgtacgtatatactgctttaactgcctctaacattatt |
100 |
Q |
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| T |
6101261 |
tttattgtagttgagttatgggtcaaacacaaacttacaaattactaagaccagtcatatattgtacgtatatactgctttaactgcctctaacattatt |
6101360 |
T |
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| Q |
101 |
cattcata------------------tgctatttctatagtatattcacgaccctcacaactttcgtccctccccgttaactttgatgcattcttatctc |
182 |
Q |
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|||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6101361 |
cattcatatgctattgctattgctattgctatttctatagtatattcacgacccccacaactttcgtccctccccgttaactttgatgcattcttatctc |
6101460 |
T |
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| Q |
183 |
atcatgtatattcttattatataaaatcaacctgtacttgg |
223 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
6101461 |
atcatgtatattcttattatataaaatcaacctgtacttgg |
6101501 |
T |
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