View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_high_3 (Length: 601)
Name: NF9112_high_3
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_high_3 |
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Alignment Details
Target: chr1 (Bit Score: 541; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 541; E-Value: 0
Query Start/End: Original strand, 19 - 584
Target Start/End: Original strand, 35696473 - 35697038
Alignment:
| Q |
19 |
ctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccg |
118 |
Q |
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| T |
35696473 |
ctacctggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccg |
35696572 |
T |
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| Q |
119 |
tgatgttctcattggaactgtcgctgttcatctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgacct |
218 |
Q |
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| T |
35696573 |
tgatgttctcattggaactgtcgctgttcatctcaacaatcttttacctcgtaacagaaaatccaagattcgtttcgttgccttgcaggttcgtcgacct |
35696672 |
T |
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| Q |
219 |
tctggtcgtccacaagggattcttaacattggtgttaatgttgtcgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggctgttg |
318 |
Q |
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| T |
35696673 |
tctggtcgtccacaagggattcttaacattggtgttaatgttgttgatgctacgatgagaagcatgccgatgtattcggagcttagttcttcggctgttg |
35696772 |
T |
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| Q |
319 |
aatattatgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaag |
418 |
Q |
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| T |
35696773 |
aatattatgatataacgaagcctaacaaacagaatcaaaactatgacaataacagtaattgtgatgccaagcatatgatgacgcttcaacgatcacaaag |
35696872 |
T |
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| Q |
419 |
cgnnnnnnntgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactggg |
518 |
Q |
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| T |
35696873 |
cgaaaaaaatgattcgacgattaatgattatgtttataatcctaatggaaaaaacggttacggtggtgaatgtgagtctgaaattagtgttcctactggg |
35696972 |
T |
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| Q |
519 |
aagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtg |
584 |
Q |
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| T |
35696973 |
aagaaaggtgtgatcgtgaacgcgaatggatcgttgtgttcggatgttggaccttcaccgtctgtg |
35697038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 24 - 136
Target Start/End: Complemental strand, 47725572 - 47725460
Alignment:
| Q |
24 |
tggaatgaaaaatttgttttccgcgtcgacgatgatttcctcctatcagaagagtctgtcattatgattgaaatctatgcctctgcttggctccgtgatg |
123 |
Q |
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| T |
47725572 |
tggaatgagaaatttgttttccgcgtcgataatgaatttctcaattcagaaagttctgttatcatgattgaaatctacaattctgcttggctccgtgata |
47725473 |
T |
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| Q |
124 |
ttctcattggaac |
136 |
Q |
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| T |
47725472 |
ttctcattggaac |
47725460 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 222 - 301
Target Start/End: Complemental strand, 47725359 - 47725280
Alignment:
| Q |
222 |
ggtcgtccacaagggattcttaacattggtgttaatgttg-tcgatgctacgatgagaagcatgccgatgtattcggagct |
301 |
Q |
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|||||||||||||||||||||||||| |||||| | |||| ||||| ||||||||||||||||| | ||||||||||| |
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| T |
47725359 |
ggtcgtccacaagggattcttaacatcggtgtt-acgttgctcgatagcacgatgagaagcatgccactttattcggagct |
47725280 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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