View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_high_5 (Length: 484)
Name: NF9112_high_5
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_high_5 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 443; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 18 - 484
Target Start/End: Original strand, 11973047 - 11973513
Alignment:
| Q |
18 |
gtgtctggctggcaccttggcagcaataaggtgcagtccaaaatgatcaaagtatgcagagactccacgtttttcaatgcttttggaagcgaagccaact |
117 |
Q |
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| T |
11973047 |
gtgtctgactggcaccttggcagcaataaggtgcagtccaaaatgatcaaagtatgcagagactccacgtttttcaatgcttttggaagcgaagccaact |
11973146 |
T |
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| Q |
118 |
tgtcacattcagaaataaccaatttctcgagtgatttgaggtattctatggtttcagacaaagaagttaattgaggacagttatgaagctgaagatcttg |
217 |
Q |
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| T |
11973147 |
tgtcacattcagaaataaccaatttctcgagtgatttgagatattctatggtttcagacaaagaagttaactgaggacagttatgaagctgaagatcttg |
11973246 |
T |
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| Q |
218 |
aagagatgttactttgtaaatactcgatggaagagtctcgagttttggaatttctcttatcgtgagagaacgcaagtttttgagaccttcccattcagtg |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11973247 |
aagagatgttactttgtaaatactcgatggaagagtctcgagttttggaatttctcttatcgtgagagaacgcaagtttttgagaccttcccattcagtg |
11973346 |
T |
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| Q |
318 |
cttgagagatcaagctcctgacagttttcaatgttaagactctggagtgagttcaaattatcaaaaccttcgggaagagactctaaatgcttccactctt |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
11973347 |
cttgagagatcaagctcctgacagttttcaatgttaagactctggagtgagttcaaattatcaaaaccttcgggaagagactttaaatgcttccactctt |
11973446 |
T |
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| Q |
418 |
taatgtcgagtttctcaagagaattgaagtattcaatccatatctttggtggtgaacgactatcctc |
484 |
Q |
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| T |
11973447 |
taatgtcgagtttctcaagagaattgaagtattcgatccatatctttgctggtgaacgactatcctc |
11973513 |
T |
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