View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_high_6 (Length: 478)
Name: NF9112_high_6
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_high_6 |
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Alignment Details
Target: chr1 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 18 - 438
Target Start/End: Original strand, 1592509 - 1592922
Alignment:
| Q |
18 |
ataatcttggtacgtagggctttgtttaacaaggctccacttgatgaatcatctaacattaaccttattgaagataccgggtcatcatagaaagtctcca |
117 |
Q |
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| T |
1592509 |
ataatcttggtacgtagggctttgtttaacaaggctccacttgatgaatcatctaacattaaccttattgaagataccgggtcatcatagaaagtctcca |
1592608 |
T |
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| Q |
118 |
tttaaatttacaatggtatccgtttatgaggaaatttcttgagtaatttcttgaatctttcccatgcctcaagtaagttttttcattagtttgcttaaaa |
217 |
Q |
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| T |
1592609 |
tttaaatttacaatggtatccgtttatgaggaaatttcttgagtaatttcttgaatctttcccatgcctcaagtaagttttttcattagtttgcttaaaa |
1592708 |
T |
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| Q |
218 |
aatgtgatgtaattcgtctttcttgcactcagaacaagagtaagagaaaaacctttgaggtttgagggtatcttcctcgacaccatgaatcttgaaattg |
317 |
Q |
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| T |
1592709 |
aatgtgatgtaattcgtctttcttgcacacagaacaagagtaagggaaaaacc-------tttgagggtatcttcctcgacaccatgaatcttgaaattg |
1592801 |
T |
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| Q |
318 |
ctagcaaactcggtgcaatagttagtaacatttggaacatcattggcaccaatttgatttagtgcaaagtcagtcttgaatcttttgaacgctcttcaat |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1592802 |
ctagcaaactcggtgcaatagttagtaacatttggaacatcattggcaccaatttgatttagtgcaaagtcagtcttgaatcttttgaacgctcttcaat |
1592901 |
T |
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| Q |
418 |
tacttctaaatgttctcatta |
438 |
Q |
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| T |
1592902 |
tacttctaaatgttctcatta |
1592922 |
T |
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