View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_low_11 (Length: 582)
Name: NF9112_low_11
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 17 - 567
Target Start/End: Complemental strand, 52026423 - 52025877
Alignment:
| Q |
17 |
taggcactcgattaacctctagcaaatatcagacaaccc-aaatactttgtcaccttcgtcaattggatatgaaattgaacgggaggaagttttctcacc |
115 |
Q |
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|||||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||| || |
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| T |
52026423 |
taggcactcggttaacctctagcaaatatcagacaaccccaaatactttgtcagcttggtcaattggatatgaaattgaacgggaggaagttttctcgcc |
52026324 |
T |
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| Q |
116 |
tnnnnnnntgagcgattggtgcaaatatgagaggtatccatgactttgaccctcgcaaatttcccaagggtccatgctcttgacaaatgacatannnnnn |
215 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52026323 |
aaaaaaaaagagcgatttgtgcaaatatgagaggtatccatgactttgaccctcgcaaatttcccaagggtccatgctcttgacaaatgacatatttttt |
52026224 |
T |
|
| Q |
216 |
ncttgttgtgaaatatagagactagtctgtttgaattgagaataacaaaaaatagaatctcgtcttgaatagtatagtatactagtatgcatgaagtaaa |
315 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52026223 |
tcttgttgtgaaata--gagactagtctgtttgaattgagaataacaaaaaatagaatctcgtcttgaatagtatagtatactagtatgcatgaagtaaa |
52026126 |
T |
|
| Q |
316 |
aaacacactagtgtctcgcatggttagtttacacgaattagatagatttcaactttatataaaaattgctacgccttttgtcaaaaataaatcaaagact |
415 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
52026125 |
aaacacactagtgtctcgcatggttagtttacacgaattagatagatttcaactttatataaaaattgctacgccttttgtcaaaaataaatcaaagatt |
52026026 |
T |
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| Q |
416 |
gacgctcttctaagttttctattttatctcttatgctcaacatacttttgagccactagtttgttatataaaaagtgcgaaagatatgtatttaaatgag |
515 |
Q |
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||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
52026025 |
gac---cttccaagttttctattttatctctaatgctcaacatacttttgagccactagtttgttatataaaaagtgtgaaagatatgtatttaaatgag |
52025929 |
T |
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| Q |
516 |
ctcctggaacccaaagtaatgacatctcctcaacacggccttgtatctctct |
567 |
Q |
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||||| ||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
52025928 |
ctcctcgaacccaaagtaatgacatcttctcaacacggccttgtatctctct |
52025877 |
T |
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