View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_low_12 (Length: 561)
Name: NF9112_low_12
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_low_12 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 257 - 557
Target Start/End: Complemental strand, 40827846 - 40827545
Alignment:
| Q |
257 |
ttgtaggtagcatttttcattttaacttggaactctagtataggcagcattttgagtaaatatatattcttttcaagatttttattttaagaaactaggg |
356 |
Q |
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| T |
40827846 |
ttgtaggtagcatttttcattttaacttggatctctagtataggcagcattttgagtaaatatatattcttttcatgatttttattttaagaaactaggg |
40827747 |
T |
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| Q |
357 |
tttgagtttccagaagtagataattggacactagagctagcaatggacattcatcatcatgtgcattgttccacccctttgctttcttac-ttttatata |
455 |
Q |
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| T |
40827746 |
tttgagtttccagaagtagataattggacactagagctagcaatggacattcatcatcatgtgcattgttccacccctttgctttcttactttttatata |
40827647 |
T |
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| Q |
456 |
attaactaaattaccaagttaacctctaaattatcaatctctccaatttatcattaaactatataattatactaatgaatccttaaactatagtataatc |
555 |
Q |
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| T |
40827646 |
attaactaaattaccaagttaacctctaaattatcaatctctccaatttatctttaaactatataattatactaatgaatccttaaactatagtaaaatc |
40827547 |
T |
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| Q |
556 |
ta |
557 |
Q |
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|| |
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| T |
40827546 |
ta |
40827545 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 17 - 186
Target Start/End: Complemental strand, 40828086 - 40827917
Alignment:
| Q |
17 |
aatatgtgatgtgaaagacattaatacgtagaatgtaacttattatctataaagaaaataggtgagtttccagaattagatcgttagagggtagagctag |
116 |
Q |
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| T |
40828086 |
aatatgtgatgtgaaagacattaatacgtagaatgtaacttattatctataaagaaaataggtgagtttccagaattagatcgttagagggtagagctag |
40827987 |
T |
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| Q |
117 |
ctgctacataattagaagtatatcattaacaaccatcatcatcacgtgtaaggcattaatatgtgatgtc |
186 |
Q |
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| T |
40827986 |
ctgctacataattagaagtatatcattaacaaccatcatcatcacgtgtaaggcattaatatgtgatgtc |
40827917 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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