View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_low_18 (Length: 472)
Name: NF9112_low_18
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_low_18 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 6 - 454
Target Start/End: Complemental strand, 244908 - 244463
Alignment:
| Q |
6 |
tttggtgttggtggaattgaaaaatgtatttgtggataagaagtaataggacagagcactacatacacaaataagaaaagaggatcaaaatttgaataga |
105 |
Q |
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| T |
244908 |
tttggtgttggtggaattgaaaaatgtatttgtggataagaagtaataggacagagcactacatacacaaataagaaaagaggatcaaaatttgaataga |
244809 |
T |
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| Q |
106 |
gcaaaccatggatcacacattttattaatttcaacatttgatcattatacttgatgatgatcactacatgcgatggaaagaacttaatacagcactaatt |
205 |
Q |
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| T |
244808 |
gcaaaccatggatcacacattttattaatttcaacatttgatcattatacttgatgatgatcactacatgcgatggaaagaacttaatacagcactaatt |
244709 |
T |
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| Q |
206 |
gaacttgctagacattaatata-nnnnnnnnnacaagattgctagacattaatatgtaccctagtaatgagaaattaataaaacattaccatatccatat |
304 |
Q |
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| T |
244708 |
gaacttgctagacattaatatatatattttttacaagattgctagacattaatatgtaccctagtaatgagaaattaataaaacattaccatatcc---- |
244613 |
T |
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| Q |
305 |
atatagctagttatttatgaagtttacgttaattttgatagagataatcagatgcaagattcagacgaacttcagattatcagaacaccttttctctttn |
404 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
244612 |
atatagctagctatttatgaagtttacgttaattttgatagagataatcagatgcaagattcagacgaacttcagattatcagaacaccttttctcttta |
244513 |
T |
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| Q |
405 |
nnnnnngataattaaaagttgtttaagacaatcattctggaagggctaag |
454 |
Q |
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| T |
244512 |
aaaaaagataattaaaagttgtttaagacaatcattctagaagggctaag |
244463 |
T |
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