View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_low_2 (Length: 883)
Name: NF9112_low_2
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 790; Significance: 0; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 790; E-Value: 0
Query Start/End: Original strand, 18 - 879
Target Start/End: Original strand, 16977071 - 16977932
Alignment:
| Q |
18 |
tggtctttggcacttttcccacctttttaaagctccatatcgatgggggagtctccacaataaccggttgtggctgcctatctcgtcgatcaaaggcgtc |
117 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
16977071 |
tggtctttggcacttttcccacctttttaaagctccatatcgatgggggtgtctccacaataaccggtggtggctgcctatctcgtcgatcaaaggcgtc |
16977170 |
T |
|
| Q |
118 |
atacttgaactcgaacacaactgattcattcttcatctcttcttcctttgtttcaaccaaagaaactccttcaacatctaaacctccgacatatttttcc |
217 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
16977171 |
atacttgaactcgaacacaactgattcattcttcatctcttcttcctttgtttcaaccaaagaaactccttcaacatctaaacctccgaaatatttttcc |
16977270 |
T |
|
| Q |
218 |
ttccctttatgagaatctgcaaccttcacacattcagtcgggtctgcaatgtcttcgactttgactttgatttttgtaacatcaatatcaccacaaagat |
317 |
Q |
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|||||||||| |||||| |||||||||||||||||| | ||||||||| | ||||| ||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
16977271 |
ttccctttataagaatcagcaaccttcacacattcattagggtctgcattctcttcaactttgactttgatttttgcaacatcaatatcaccgcaaagat |
16977370 |
T |
|
| Q |
318 |
tcacactctctttggctttggtaacatttacaacatcaaaatcatcacgaagattcacactttctttggttttgccaacatttacatcatcataatttac |
417 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
16977371 |
tcacactctctttggctttggtaacatttacaacatcaaaatcatcacgaacattcacactttctttggttttgccaacatttacatcgtcataatttac |
16977470 |
T |
|
| Q |
418 |
aacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagagacattttgcactgccttttgtatatctgatatt |
517 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
16977471 |
aacatcaagatcatcatgaagattcacactttcttttgctttactaacatttacatcatcatcagagacattttgcactgccctttgtatatctgatatt |
16977570 |
T |
|
| Q |
518 |
tccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgtacaaaagaatccttcttcttctcaaaggcattag |
617 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16977571 |
tccttctggtttgaagaagaagaagaaccctttattcgatctgaatgctccacttcatcagtgtgtacaaaagaatccttcttcttctcaaaggcattag |
16977670 |
T |
|
| Q |
618 |
aaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctcaccataatctgaatgctccatttc |
717 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16977671 |
aaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctcaccataatctgaatgctccatttc |
16977770 |
T |
|
| Q |
718 |
accattgtttacataaggacttttatccttcatctcctcattctttgtggaagatggaatattttcaacgtttatctcctcatcattcaatccagaaatt |
817 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
16977771 |
accattgtttacagaaggacttttatccttcatctcctcattctttgtggaagatggactattttcaacgtttatctcctcatcattcaatccagaaatt |
16977870 |
T |
|
| Q |
818 |
ccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattatctacc |
879 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
16977871 |
ccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaagtattttctacc |
16977932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 6e-52
Query Start/End: Original strand, 18 - 198
Target Start/End: Original strand, 16968155 - 16968335
Alignment:
| Q |
18 |
tggtctttggcacttttcccacctttttaaagctccatatcgatgggggagtctccacaataaccggttgtggctgcctatctcgtcgatcaaaggcgtc |
117 |
Q |
| |
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|||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||| || |||||||||||||||||||||||| || || |
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| T |
16968155 |
tggtcttttgcacttttcccacctttttaaagctccatatcgatgggggtgtctccacaggaaccagtggtggctgcctatctcgtcgatcaacagcatc |
16968254 |
T |
|
| Q |
118 |
atacttgaactcgaacacaactgattcattcttcatctcttcttcctttgtttcaaccaaagaaactccttcaacatctaa |
198 |
Q |
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|||||||||||| ||||||| ||||||||||||||||||||||| |||| ||| ||| | |||| |||| |||||||||| |
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| T |
16968255 |
atacttgaactccaacacaattgattcattcttcatctcttcttgctttttttgaactgatgaaattcctccaacatctaa |
16968335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 598 - 694
Target Start/End: Complemental strand, 10601969 - 10601873
Alignment:
| Q |
598 |
cttcttctcaaaggcattagaaattgctacactaccataatctgaatgctcaacttcatcattgtttacagaaggatttttatcgctcatctcctca |
694 |
Q |
| |
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|||||||||||||| | ||||| |||||||||||||||||||||||||||| ||||||||||| |||| ||||||| ||||||| ||| ||||||| |
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| T |
10601969 |
cttcttctcaaaggtagtagaagttgctacactaccataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctca |
10601873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 16 - 110
Target Start/End: Complemental strand, 10602593 - 10602499
Alignment:
| Q |
16 |
catggtctttggcacttttcccacctttttaaagctccatatcgatgggggagtctccacaataaccggttgtggctgcctatctcgtcgatcaa |
110 |
Q |
| |
|
|||||||||| |||||||| ||||||| |||| |||||||||||||||||| ||||||||| ||||||||||||||| ||||| ||||||||| |
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| T |
10602593 |
catggtcttttgcactttttccaccttcttaaggctccatatcgatgggggtgtctccacagaaaccggttgtggctgtgtatcttgtcgatcaa |
10602499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 694 - 759
Target Start/End: Complemental strand, 10601936 - 10601871
Alignment:
| Q |
694 |
accataatctgaatgctccatttcaccattgtttacataaggacttttatccttcatctcctcatt |
759 |
Q |
| |
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|||||||||||||||||||| |||| |||| |||| | |||||||||||||||||| ||||||||| |
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| T |
10601936 |
accataatctgaatgctccacttcatcattctttatagaaggacttttatccttcacctcctcatt |
10601871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 761 - 848
Target Start/End: Original strand, 16968577 - 16968664
Alignment:
| Q |
761 |
tttgtggaagatggaatattttcaacgtttatctcctcatcattcaatccagaaattccactttgtttatccatcacctctctaacca |
848 |
Q |
| |
|
||||||||||||||| |||| ||||| || | ||| ||||||||| ||||||||||||||||| ||||||| |||||||| |||| |
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| T |
16968577 |
tttgtggaagatggactattctcaacattcacctcttcatcattcctctcagaaattccactttgtctatccattacctctctcacca |
16968664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 810 - 867
Target Start/End: Original strand, 17008001 - 17008058
Alignment:
| Q |
810 |
cagaaattccactttgtttatccatcacctctctaaccaaatcctcgaccacattcaa |
867 |
Q |
| |
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|||||||||||| |||| |||||||||||||||||| ||| | ||| |||| |||||| |
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|
| T |
17008001 |
cagaaattccacattgtctatccatcacctctctaatcaacttctccaccatattcaa |
17008058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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