View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9112_low_22 (Length: 391)

Name: NF9112_low_22
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9112_low_22
NF9112_low_22
[»] chr8 (14 HSPs)
chr8 (18-380)||(6313400-6313762)
chr8 (18-264)||(14403321-14403567)
chr8 (18-297)||(5568751-5569026)
chr8 (18-294)||(5598195-5598471)
chr8 (18-294)||(5636804-5637080)
chr8 (52-264)||(5547632-5547838)
chr8 (18-266)||(5624613-5624855)
chr8 (18-260)||(32632741-32632971)
chr8 (18-263)||(13164448-13164678)
chr8 (18-217)||(5572866-5573054)
chr8 (18-175)||(12190344-12190498)
chr8 (18-175)||(12434772-12434926)
chr8 (77-175)||(5562471-5562569)
chr8 (194-244)||(5562606-5562656)
[»] scaffold0363 (1 HSPs)
scaffold0363 (18-264)||(15286-15532)
[»] chr2 (1 HSPs)
chr2 (76-151)||(19495905-19495980)


Alignment Details
Target: chr8 (Bit Score: 335; Significance: 0; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 18 - 380
Target Start/End: Complemental strand, 6313762 - 6313400
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||    
T  6313762 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaggttgttgttattccagtgttctaccatgttgacccttcacacgt 6313663  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6313662 gcggaagcagactggtagttatggcactgcgttgattaaacacaagaaacaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 6313563  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggtttttctgtttttgcatacattaaaattaaattttatcggtctacccgtcaaattaat 317  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6313562 caagcagctaatttgtctggttttcattccaccacatacaggtttttctgtttttgcatacattaaaattaaattttatcggtctgcccgtcaaattaat 6313463  T
Q  318 atcaatgttgtaaaaatcagatcggagatcgaaccgacgaaacctctaaatcatggttctgtg 380  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6313462 atcaatgttgtaaaaatcagatcggagatcgaaccgaagaaacctctaaatcatggttctgtg 6313400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 264
Target Start/End: Original strand, 14403321 - 14403567
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||    
T  14403321 gtttgaacgaactggttgaaataatggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttcacacgt 14403420  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    ||||||||||||||| ||||| ||||||||||||   ||||| | | |||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  14403421 gcggaagcagactgggagttacggcactgcgttggaaaaacatatggagcaagacaacaatggtgataagatgatgcaaaattggaagaatgctcttttt 14403520  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggttttt 264  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||    
T  14403521 caagctgctaatttgtctggttttcattctgcaacatacaggttttt 14403567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 142; E-Value: 2e-74
Query Start/End: Original strand, 18 - 297
Target Start/End: Original strand, 5568751 - 5569026
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||| |||||||||||| ||||||||||  |||||||||||||||| |||||   || ||| ||||| |||||||||||||||||||||||||| ||    
T  5568751 gtttgaatgaacttgttgaactaatggagtgccgtaacaaaaatgaagacgacaacattggtgtgattcctgtgttctaccatgttgacccttcacatgt 5568850  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    |||||||||||| || |||||||||| ||| ||| | |||||||||   ||||  ||  | |||||||||||||||||||||||||||||||||||||||    
T  5568851 gcggaagcagaccgggagttatggcagtgcattggcgaaacacaag---caagagaaccaagatgataagatgatgcaaaattggaagaatgctcttttt 5568947  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggtttttctgtttttgcatacattaaaattaaattttatc 297  Q
    |||||||||||||||||||||||||||||| | ||||||||||||||  || |||| |||||||||||||| ||||||||    
T  5568948 caagctgctaatttgtctggttttcattcctcgacatacaggttttt-agtctttgtatacattaaaattatattttatc 5569026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 294
Target Start/End: Complemental strand, 5598471 - 5598195
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||| |||||||| | |||||| ||||| || || |||||||||||||||||||||||    
T  5598471 gtttgaacgaactcgttcaaataatggagtgtggtaacaaaaatgaggatgacaacgttgttgtcattcctgttttttaccatgttgacccttcacacgt 5598372  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    |||||| || || ||   ||| ||| ||||  || | ||||||| | |||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  5598371 gcggaaacaaacagggtattacggcgctgcactggcaaaacacagggagcaaggcaacaatgatgataagatgatacaaaattggaagaatgttcttttt 5598272  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggtttttctgtttttgcatacattaaaattaaatttt 294  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||   | |||||||  |||||||||| |||||    
T  5598271 caagcagctaatttgtctggttttcattcaaccacatacaggttttttaatctttgcattaattaaaattagatttt 5598195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 18 - 294
Target Start/End: Original strand, 5636804 - 5637080
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||| ||| |||||||||||||| ||||||||||||| |||||||| | |||||| ||||| || || |||||||||||||||||||||||    
T  5636804 gtttgaacgaactcgttcaaataatggagtgtggtaacaaaaatgaggatgacaacgttgttgtcattcctgttttttaccatgttgacccttcacacgt 5636903  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    |||||| || || ||   ||| ||| ||||  || | ||||||| | |||||||||| ||||||||||||||||| |||||||||||||||| |||||||    
T  5636904 gcggaaacaaacagggtattacggcgctgcactggcaaaacacagggagcaaggcaacaatgatgataagatgatacaaaattggaagaatgttcttttt 5637003  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggtttttctgtttttgcatacattaaaattaaatttt 294  Q
    ||||| ||||||||||||||||||||||| |||||||||||||||||   | |||||||  |||||||||| |||||    
T  5637004 caagcagctaatttgtctggttttcattcaaccacatacaggttttttaatctttgcattaattaaaattagatttt 5637080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 52 - 264
Target Start/End: Original strand, 5547632 - 5547838
Alignment:
Q  52 taacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgttg 151  Q
    ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||| |||||||||||||| |||    
T  5547632 taacaaaaatgaagatgacaacgttgttgttattcctgtgttctaccatgttgacccttcacacgtgaggaagcaaactgggagttatggcactgccttg 5547731  T
Q  152 actaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctctttttcaagctgctaatttgtctggttttcattccacca 251  Q
     ||||||||||||||||||||||  |  ||||      ||||||||| ||||| | |||||||| | |||||||||||||||||||||||||||| ||||    
T  5547732 gctaaacacaagaagcaaggcaacgaccatga------gatgcaaaaatggaatactgctctttctgaagctgctaatttgtctggttttcattcaacca 5547825  T
Q  252 catacaggttttt 264  Q
    |||||||||||||    
T  5547826 catacaggttttt 5547838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 5624613 - 5624855
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||| ||| ||||||||||||||  ||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||||| ||    
T  5624613 gtttgaacgaactcgttcaaataatggagtgtaataacaaaaatgaagatgacaatgttgttgttattcctgtgttctaccatgttgacccttcacaagt 5624712  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    |||||| ||||| || ||||||||||||||  || ||||||||||| ||||||||||  |  ||||      ||||||||| ||||| | ||||||||||    
T  5624713 gcggaaacagaccggaagttatggcactgctctggctaaacacaaggagcaaggcaacgaccatga------gatgcaaaaatggaatactgctcttttt 5624806  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggtttttct 266  Q
    ||||||||||||||||||||||||||||   ||| | ||||||||||||    
T  5624807 caagctgctaatttgtctggttttcatttagccaaaaacaggtttttct 5624855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 18 - 260
Target Start/End: Original strand, 32632741 - 32632971
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||| |||||||||||||||||| ||||||||         ||||| | || ||||||||| ||||| |||||| ||||||| || | |||    
T  32632741 gtttgaacgaactcgttgaaataatggagtgtagtaacaaa---------gacaacgttgctgttattcctgtgttttaccatattgacccctcccgcgt 32632831  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    |||||| |||||||| ||||| |||||||||||| | ||||||||||||||||||     |||| |||||||||||||||||||||||||||||||||||    
T  32632832 gcggaaacagactggaagttacggcactgcgttggcaaaacacaagaagcaaggctg---tgatcataagatgatgcaaaattggaagaatgctcttttt 32632928  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggt 260  Q
    ||||| || ||||| || ||||||||||| |||||||||||||    
T  32632929 caagcagccaatttatccggttttcattctaccacatacaggt 32632971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 18 - 263
Target Start/End: Original strand, 13164448 - 13164678
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||| ||| |||||||||||||| | ||||| |||||| |||| || | |||||||||||| |||||||||||||||||||||||||| ||    
T  13164448 gtttgaacgaactagttcaaataatggagtgtagcaacaacaatgaaaatgataacgttgttgttattcctgtgttctaccatgttgacccttcacatgt 13164547  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
     |||||||||||||| ||||| |||||||| ||| | ||||||               | |||  |||||||| |||||||||||||||||||||||||     
T  13164548 tcggaagcagactggcagttacggcactgctttggcaaaacac---------------attgaccataagatgttgcaaaattggaagaatgctcttttc 13164632  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggtttt 263  Q
     ||||  ||||||| ||||| || ||||| ||||||||||||||||    
T  13164633 gaagcatctaatttatctggattccattctaccacatacaggtttt 13164678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 18 - 217
Target Start/End: Original strand, 5572866 - 5573054
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    |||||||| ||||||||||||||||| | |||    ||||||||||| | ||||| | |||||||||||| ||     ||||||||||||||||||||||    
T  5572866 gtttgaacaaacttgttgaaataatgaaatgtc---acaaaaatgaaaaagacaatgttgttgttattcccgt-----accatgttgacccttcacacgt 5572957  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
     ||||||||||| || ||||| |||||||| ||| | ||||||||||||||||||   |||||||||| |||||| |||| ||||||||| |||||||||    
T  5572958 ccggaagcagacggggagttacggcactgctttggcaaaacacaagaagcaaggc---aatgatgatatgatgatacaaatttggaagaaagctcttttt 5573054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 12190498 - 12190344
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||| ||||| |||||||||||| ||||    || |||||||| || ||||| | |||||||||||| |||||||||| | | || |||||||| ||    
T  12190498 gtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcacatgt 12190402  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaa 175  Q
     || |||||||| || |||||   ||| |||||| | ||||| ||||| |||||||||    
T  12190401 ccgaaagcagacagggagttaccacacggcgttggcgaaacaaaagaaacaaggcaaa 12190344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 18 - 175
Target Start/End: Complemental strand, 12434926 - 12434772
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||| ||||| |||||||||||| ||||    || |||||||| || ||||| | |||||||||||| |||||||||| | | || |||||||| ||    
T  12434926 gtttgaatgaactcgttgaaataatgaagtgc---aaaaaaaatgacgaagacaacgttgttgttattcctgtgttctaccgtatagaaccttcacatgt 12434830  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaa 175  Q
     || |||||||| || |||||   ||| |||||| | ||||| ||||| |||||||||    
T  12434829 ccgaaagcagacagggagttaccacacggcgttggcgaaacaaaagaaacaaggcaaa 12434772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 77 - 175
Target Start/End: Original strand, 5562471 - 5562569
Alignment:
Q  77 gttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaa 175  Q
    ||||||| ||| |||||||||||||||||||||||  | || ||||| || || || ||||| ||||||||| || | |||||||||||| ||| ||||    
T  5562471 gttgttaatcctgtgttctaccatgttgacccttctgatgttcggaaacacacagggagttacggcactgcgctggcaaaacacaagaaggaagacaaa 5562569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 244
Target Start/End: Original strand, 5562606 - 5562656
Alignment:
Q  194 caaaattggaagaatgctctttttcaagctgctaatttgtctggttttcat 244  Q
    ||||| |||||||||||||||||| |||| |||||||| ||||| ||||||    
T  5562606 caaaaatggaagaatgctctttttgaagcagctaatttatctggatttcat 5562656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0363 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: scaffold0363
Description:

Target: scaffold0363; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 18 - 264
Target Start/End: Complemental strand, 15532 - 15286
Alignment:
Q  18 gtttgaacgaacttgttgaaataatggagtgttgtaacaaaaatgaagatgacaaagatgttgttattccagtgttctaccatgttgacccttcacacgt 117  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||||| | ||||||| |||| |||||||||||||||||||||||||||||    
T  15532 gtttgaacgaactggttgaaataatggagtgtagtaacaaaaatgaagatgacaacgttgttgttgttcctgtgttctaccatgttgacccttcacacgt 15433  T
Q  118 gcggaagcagactggtagttatggcactgcgttgactaaacacaagaagcaaggcaaaaatgatgataagatgatgcaaaattggaagaatgctcttttt 217  Q
    ||||||||||||||| ||||| ||||||||||||   ||||| | | |||||| ||| |||| |||||||||||||||||||||||||||||||||||||    
T  15432 gcggaagcagactgggagttacggcactgcgttggaaaaacatatggagcaagacaacaatggtgataagatgatgcaaaattggaagaatgctcttttt 15333  T
Q  218 caagctgctaatttgtctggttttcattccaccacatacaggttttt 264  Q
    |||||||||||||||||||||||||||||  | ||||||||||||||    
T  15332 caagctgctaatttgtctggttttcattctgcaacatacaggttttt 15286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 76 - 151
Target Start/End: Complemental strand, 19495980 - 19495905
Alignment:
Q  76 tgttgttattccagtgttctaccatgttgacccttcacacgtgcggaagcagactggtagttatggcactgcgttg 151  Q
    ||||||| |||| |||||||||| | |||| |||||| | || |||||||||||||| ||||||||| ||||||||    
T  19495980 tgttgttcttcctgtgttctaccgtattgaaccttcatatgttcggaagcagactgggagttatggcgctgcgttg 19495905  T

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