View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9112_low_27 (Length: 355)

Name: NF9112_low_27
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9112_low_27
NF9112_low_27
[»] chr7 (3 HSPs)
chr7 (274-345)||(34929930-34930001)
chr7 (19-91)||(34930265-34930337)
chr7 (104-169)||(34930102-34930167)


Alignment Details
Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 274 - 345
Target Start/End: Complemental strand, 34930001 - 34929930
Alignment:
Q  274 ccacacatgtattgccacatcctctaatttgtcatctcattattaaagcaaaaatagaccccaatatctgtg 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34930001 ccacacatgtattgccacatcctctaatttgtcatctcattattaaagcaaaaatagaccccaatatctgtg 34929930  T

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Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 19 - 91
Target Start/End: Complemental strand, 34930337 - 34930265
Alignment:
Q  19 atatagcttgtgtatgagatcatgcgaaaataacttctagtgtatattgaattactttaattttaggttttgt 91  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  34930337 atatagcttgtgtatgagatcatgcaaaaataacttctagtgtatattgaattactttaattttaggttttgt 34930265  T

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Target: chr7; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 104 - 169
Target Start/End: Complemental strand, 34930167 - 34930102
Alignment:
Q  104 aaaggttcattttttatgttttgtcaatctggataatgtaagtcattggatgatgttgcaatgtat 169  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34930167 aaaggttcattttttatgttttgtcaatctggataatgtaagtcattggatgatgttgcaatgtat 34930102  T

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