View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9112_low_29 (Length: 342)

Name: NF9112_low_29
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9112_low_29
NF9112_low_29
[»] chr8 (5 HSPs)
chr8 (13-324)||(23094604-23094906)
chr8 (20-149)||(11826914-11827043)
chr8 (77-142)||(1495349-1495414)
chr8 (276-324)||(11826660-11826708)
chr8 (171-225)||(1495420-1495478)
[»] chr7 (2 HSPs)
chr7 (20-260)||(47346649-47346891)
chr7 (258-324)||(47347205-47347271)


Alignment Details
Target: chr8 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 13 - 324
Target Start/End: Complemental strand, 23094906 - 23094604
Alignment:
Q  13 attatactaatgtagttgaaagccgcgtggctgtacgatctactttctgaatctaatttgaccttctgttgcagagacctcattagctttgcttcggcat 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23094906 attatactaatgtagttgaaagccgcgtggctgtacgatctactttctgaatctaatttgaccttctgttgcagagacctcattagctttgcttcggcat 23094807  T
Q  113 ccggattactgtatctcggtgtactcttctgtaagtgccattgcaattgtattgctagaatagatgacgtcttgtgacacatcatctccacataaatgtt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||        
T  23094806 ccggattactgtatctcggtgtactcttctgtaagtgccattgcaattgtattgctggaatagatgacgtcttgtgacacatcatctccacataaa---- 23094711  T
Q  213 ctagatttttgcttcagataaaagaaaaagtattgaagtggctatatagaaataaaggaaactgagtttatagaaattggaaagttgaaagcacatattt 312  Q
     || || ||  ||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23094710 -taaatgtt--ct--agataaaagaaaaagtattgaagtggctatatagaaataaaggaaactgagtttatagaaattggaaagttgaaagcacatattt 23094616  T
Q  313 tccgacattttt 324  Q
    ||||||||||||    
T  23094615 tccgacattttt 23094604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 94; E-Value: 8e-46
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 11827043 - 11826914
Alignment:
Q  20 taatgtagttgaaagccgcgtggctgtacgatctactttctgaatctaatttgaccttctgttgcagagacctcattagctttgcttcggcatccggatt 119  Q
    |||||||||||||||||  |||||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  11827043 taatgtagttgaaagccatgtggctgtacaaactactttctgaatctattttgaccttctgttgcagagacctcattagctttgattcggcatctggatt 11826944  T
Q  120 actgtatctcggtgtactcttctgtaagtg 149  Q
    |||||||||||| ||| |||||||||||||    
T  11826943 actgtatctcggggtattcttctgtaagtg 11826914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 77 - 142
Target Start/End: Original strand, 1495349 - 1495414
Alignment:
Q  77 tctgttgcagagacctcattagctttgcttcggcatccggattactgtatctcggtgtactcttct 142  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  1495349 tctgttgcagagacctcattagctttgcttaggcatccggattactgtatctcggtgtactcttct 1495414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 276 - 324
Target Start/End: Complemental strand, 11826708 - 11826660
Alignment:
Q  276 gagtttatagaaattggaaagttgaaagcacatattttccgacattttt 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  11826708 gagtttatagaaattggaaagttgaaagcacatattttccgacattttt 11826660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 171 - 225
Target Start/End: Original strand, 1495420 - 1495478
Alignment:
Q  171 aatagatgacgtcttgtgacacatcatctccac----ataaatgttctagatttttgct 225  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||||||||||||    
T  1495420 aatagatgacgtcttgtgacacatcatctccacataaataaatgttctagatttttgct 1495478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 125; Significance: 2e-64; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 20 - 260
Target Start/End: Original strand, 47346649 - 47346891
Alignment:
Q  20 taatgtagttgaaagccgcgtggctgtacgatctactttctgaatctaatttgaccttctgttgcagagacctcattagctttgcttcggcatccggatt 119  Q
    ||||||||||||||   |||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47346649 taatgtagttgaaataagcgtggctgtacaaactactttctgaatctaatttgaccttctgttgcagagacctcattagctttgcttcggcatccggatt 47346748  T
Q  120 actgtatctcggtgtactcttctgtaagtgccatt-----------gcaattgtattgctagaatagatgacgtcttgtgacacatcatctccacataaa 208  Q
    |||||||||||| ||||||||||||||||| | ||            || | |||||||| |||| |||||||||||||||| |||        ||||||    
T  47346749 actgtatctcggggtactcttctgtaagtgactttaatgctttgtaccattcgtattgctggaat-gatgacgtcttgtgacgcat--------cataaa 47346839  T
Q  209 tgttctagatttttgcttcagataaaagaaaaagtattgaagtggctatata 260  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47346840 tgttctagatttttgcttcagataaaagaaaaagtattgaagtggctatata 47346891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 258 - 324
Target Start/End: Original strand, 47347205 - 47347271
Alignment:
Q  258 atagaaataaaggaaactgagtttatagaaattggaaagttgaaagcacatattttccgacattttt 324  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47347205 atagaaataaaggaaactgagtttatagaaattggaaagttgaaagcacatattttccgacattttt 47347271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University