View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_low_36 (Length: 284)
Name: NF9112_low_36
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_low_36 |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 6 - 266
Target Start/End: Complemental strand, 28128875 - 28128615
Alignment:
| Q |
6 |
tggagaagcagagaaagattggaaccgagactttcaacaagatggagtttacaagaatgaagtaagcaagcttaaacgcgaaccaaaggttaaacacggt |
105 |
Q |
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| T |
28128875 |
tggagaagaacagaaagattggaaccgagactttcaacaagatggagtttacaagaatgaggtaagcaagcttaaacgcgaaccaaaggttaaacactgt |
28128776 |
T |
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| Q |
106 |
cgaatgaaacacctgttctgaaaaaggagagaaaataaacaattaatagaatagtcccacaccgggtggttttggaaacagagaaaagatacaagtctat |
205 |
Q |
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| T |
28128775 |
cgaatgaaacacctgttatgaaaaaggagagaaaataaacaattaatagaatagtcccacaccgggtggttttggaaacagagaaaagatacaagtctat |
28128676 |
T |
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| Q |
206 |
aaaagcaacgagtgacggtaagggattagcatgcattagaggatacttcatagggtaatta |
266 |
Q |
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| T |
28128675 |
aaaagcaacgagtgacggtaagggattagcattcattagaggatacttcatggtgtaatta |
28128615 |
T |
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Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 33 - 110
Target Start/End: Original strand, 20026705 - 20026782
Alignment:
| Q |
33 |
agactttcaacaagatggagtttacaagaatgaagtaagcaagcttaaacgcgaaccaaaggttaaacacggtcgaat |
110 |
Q |
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| T |
20026705 |
agactttcaacaaggttgagtttacatgaatgatgtaaagaagagtaaccgcgaaccaaagagtaaacacggtcgaat |
20026782 |
T |
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