View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9112_low_40 (Length: 257)

Name: NF9112_low_40
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9112_low_40
NF9112_low_40
[»] chr2 (3 HSPs)
chr2 (168-243)||(1230264-1230339)
chr2 (6-77)||(1230102-1230173)
chr2 (7-77)||(1230031-1230101)
[»] chr7 (1 HSPs)
chr7 (168-243)||(8079210-8079284)


Alignment Details
Target: chr2 (Bit Score: 76; Significance: 3e-35; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 1230264 - 1230339
Alignment:
Q  168 atgaaatcaaaagcttaaactgaactggaacgaatttgaaactgaaatcgaagacgagccactaccagaacacgaa 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1230264 atgaaatcaaaagcttaaactgaactggaacgaatttgaaactgaaatcgaagacgagccactaccagaacacgaa 1230339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 6 - 77
Target Start/End: Original strand, 1230102 - 1230173
Alignment:
Q  6 catcgtggtgggtacgggtgttcacacgataagaatccccaaatttgttgtatgatggaaccaagagtactt 77  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1230102 catcgtggtgggtacgggtgttcacacgataagaatccccaaatttgttgtatgatggaaccaagagtactt 1230173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 77
Target Start/End: Complemental strand, 1230101 - 1230031
Alignment:
Q  7 atcgtggtgggtacgggtgttcacacgataagaatccccaaatttgttgtatgatggaaccaagagtactt 77  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1230101 atcgtggtgggtacgggtgttcacacgataagaatccccaaatttgttgtatgatggaaccaagagtactt 1230031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 8079210 - 8079284
Alignment:
Q  168 atgaaatcaaaagcttaaactgaactggaacgaatttgaaactgaaatcgaagacgagccactaccagaacacgaa 243  Q
    ||||||||||||||| ||||||||| |||| ||||| ||||||||||||||||||||  || ||||||||||||||    
T  8079210 atgaaatcaaaagctgaaactgaacaggaaagaattcgaaactgaaatcgaagacga-acaataccagaacacgaa 8079284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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