View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_low_43 (Length: 248)
Name: NF9112_low_43
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_low_43 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 44 - 220
Target Start/End: Complemental strand, 6101202 - 6101026
Alignment:
| Q |
44 |
ttcatctgattctgttcattcatatgtctcaacagtgaacaatcacgatctccgttttgttcgaaaacgacgccatatcttgtcctcatcctccataaaa |
143 |
Q |
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| T |
6101202 |
ttcatctgattctgttcattcatatgtctcaacagtgaacaatcacgatctccgttttgttcgaaaacgacgctatatcttgtcctcatcctccataaaa |
6101103 |
T |
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| Q |
144 |
caatcctatattttattcacatgcacattcaaattaagaatttcattttgtacaaaagtttaatctgattttactat |
220 |
Q |
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| T |
6101102 |
caatcctatattttattcacatgcacattcaagttcagaatttcattttgtatcaaagtttaatccgattttactat |
6101026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Complemental strand, 6101249 - 6101220
Alignment:
| Q |
1 |
ctgatcagactcaaagacagagattcacct |
30 |
Q |
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| T |
6101249 |
ctgatcagactcaaagacagagattcacct |
6101220 |
T |
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