View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9112_low_52 (Length: 216)

Name: NF9112_low_52
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9112_low_52
NF9112_low_52
[»] chr4 (17 HSPs)
chr4 (24-215)||(40886333-40886524)
chr4 (147-216)||(8110314-8110383)
chr4 (147-200)||(21018411-21018464)
chr4 (147-216)||(50196493-50196562)
chr4 (156-216)||(41930893-41930953)
chr4 (147-206)||(51686287-51686346)
chr4 (158-216)||(40884752-40884809)
chr4 (147-200)||(1305953-1306006)
chr4 (147-200)||(6178623-6178676)
chr4 (147-200)||(30723560-30723613)
chr4 (147-200)||(49093607-49093660)
chr4 (146-185)||(12892100-12892139)
chr4 (126-216)||(55278591-55278681)
chr4 (147-200)||(31424925-31424978)
chr4 (147-200)||(44674664-44674717)
chr4 (147-216)||(50020523-50020592)
chr4 (147-215)||(14317773-14317841)
[»] chr8 (15 HSPs)
chr8 (124-216)||(22501005-22501097)
chr8 (147-216)||(30761097-30761166)
chr8 (147-206)||(34819435-34819494)
chr8 (147-200)||(15033584-15033637)
chr8 (147-206)||(40075525-40075584)
chr8 (147-200)||(486552-486605)
chr8 (147-200)||(1055711-1055764)
chr8 (146-215)||(12716102-12716170)
chr8 (147-200)||(23019106-23019159)
chr8 (147-200)||(26662632-26662685)
chr8 (147-200)||(42482325-42482378)
chr8 (147-206)||(5301144-5301203)
chr8 (147-206)||(35554761-35554820)
chr8 (147-200)||(41239373-41239426)
chr8 (147-199)||(39831570-39831622)
[»] chr7 (14 HSPs)
chr7 (145-216)||(17747510-17747581)
chr7 (140-216)||(22726562-22726638)
chr7 (24-71)||(17747417-17747465)
chr7 (145-216)||(27450505-27450576)
chr7 (147-200)||(5538370-5538423)
chr7 (147-200)||(9368221-9368274)
chr7 (147-200)||(15071102-15071155)
chr7 (147-200)||(35607210-35607263)
chr7 (147-216)||(36980709-36980778)
chr7 (147-200)||(41883725-41883778)
chr7 (147-200)||(48406543-48406596)
chr7 (147-200)||(17460081-17460134)
chr7 (147-200)||(17593080-17593133)
chr7 (147-216)||(47521796-47521865)
[»] chr5 (11 HSPs)
chr5 (146-216)||(15939804-15939874)
chr5 (147-216)||(42937481-42937550)
chr5 (147-200)||(8482-8535)
chr5 (147-206)||(511447-511506)
chr5 (147-198)||(7761730-7761781)
chr5 (147-200)||(28879783-28879836)
chr5 (147-200)||(30708232-30708285)
chr5 (147-202)||(5199943-5199998)
chr5 (147-206)||(38971214-38971273)
chr5 (155-200)||(28238560-28238605)
chr5 (147-200)||(38407670-38407723)
[»] chr6 (10 HSPs)
chr6 (155-216)||(21603544-21603605)
chr6 (147-200)||(6204334-6204387)
chr6 (147-200)||(11691301-11691354)
chr6 (147-200)||(22304415-22304468)
chr6 (147-200)||(27638933-27638986)
chr6 (147-200)||(30826437-30826490)
chr6 (147-216)||(31771225-31771294)
chr6 (147-206)||(2405876-2405935)
chr6 (155-206)||(24885466-24885517)
chr6 (142-216)||(3502151-3502225)
[»] chr2 (8 HSPs)
chr2 (147-216)||(6637911-6637980)
chr2 (141-205)||(25514867-25514931)
chr2 (147-200)||(3938358-3938411)
chr2 (147-200)||(15834441-15834494)
chr2 (147-200)||(30493780-30493833)
chr2 (147-200)||(39950673-39950726)
chr2 (147-200)||(43536523-43536576)
chr2 (147-200)||(43981706-43981759)
[»] chr1 (14 HSPs)
chr1 (145-214)||(17513324-17513393)
chr1 (147-216)||(51337067-51337136)
chr1 (155-200)||(19159205-19159250)
chr1 (147-200)||(26878894-26878947)
chr1 (147-200)||(50617711-50617764)
chr1 (155-206)||(45828748-45828799)
chr1 (164-206)||(47661045-47661087)
chr1 (147-216)||(94927-94996)
chr1 (147-200)||(3729162-3729215)
chr1 (147-200)||(13636819-13636872)
chr1 (147-200)||(19522106-19522159)
chr1 (147-200)||(21144114-21144167)
chr1 (147-216)||(22527163-22527232)
chr1 (147-200)||(31780486-31780539)
[»] scaffold0117 (1 HSPs)
scaffold0117 (142-206)||(19244-19308)
[»] chr3 (17 HSPs)
chr3 (147-216)||(41615418-41615487)
chr3 (127-206)||(12373870-12373949)
chr3 (147-200)||(2648391-2648444)
chr3 (161-206)||(12672613-12672658)
chr3 (147-200)||(34048610-34048663)
chr3 (147-200)||(42900975-42901028)
chr3 (147-200)||(46698130-46698183)
chr3 (147-200)||(49141345-49141398)
chr3 (147-200)||(54389310-54389363)
chr3 (147-206)||(48565993-48566052)
chr3 (147-202)||(49266184-49266239)
chr3 (158-204)||(6928300-6928346)
chr3 (147-216)||(16861591-16861660)
chr3 (147-200)||(47071001-47071054)
chr3 (147-200)||(50477592-50477645)
chr3 (147-200)||(52388428-52388481)
chr3 (146-194)||(26334793-26334841)


Alignment Details
Target: chr4 (Bit Score: 172; Significance: 1e-92; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 24 - 215
Target Start/End: Original strand, 40886333 - 40886524
Alignment:
Q  24 aagaaaccaacaaatgccacaaaaactaaaaacaagtcataaacataaggcctaacatcagtcctaaacatcaacccatccctactactcgtcctgatga 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||    
T  40886333 aagaaaccaacaaatgccacaaaaactaaaaacaagtcataaacataaggcctaacatcagtcctaaacatcaacccatccatcctactcgtcctgatga 40886432  T
Q  124 tgctgctcctgcttgacatgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggc 215  Q
    ||||||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40886433 tgctgctcctgcttggcatgctacctcctcggcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggc 40886524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 8110383 - 8110314
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| ||| |||||||| ||||||||| || ||||||||||||||||| | |||||||    
T  8110383 cctcctcggcctctggcctcccctcctggccaatatcggcgcgatctgctccctaacatggctcatggcc 8110314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 21018411 - 21018464
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||    
T  21018411 cctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccct 21018464  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 50196562 - 50196493
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| ||| |||||||||||| |||||||| ||||||||||||| ||| | |||||||    
T  50196562 cctcctcggcctctggcctcacctcctggtcaagatcggtgcgatctgctccctaagatggctcatggcc 50196493  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 41930893 - 41930953
Alignment:
Q  156 cctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||||||| ||||||| | || ||||||||||||||||| |||||||||    
T  41930893 cctctggcctcgcctcctggccaatatcagcgcgatctgctccctaacatggcgcatggcc 41930953  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 51686346 - 51686287
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||||||| |||||||| ||||||| ||||| || |||||||||||||||||    
T  51686346 cctcctcggcctctggcctcgcctcatggtcaagatcggcgcgatctgctccctaacatg 51686287  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 158 - 216
Target Start/End: Original strand, 40884752 - 40884809
Alignment:
Q  158 tctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||||| ||||||||| ||||||||||| ||||||| ||||||||| |||||||||    
T  40884752 tctgggctcacctcctggttaatatcggtgcgatctgct-cctaacatggcgcatggcc 40884809  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 1305953 - 1306006
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  1305953 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 1306006  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 6178623 - 6178676
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  6178623 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 6178676  T

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Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 30723560 - 30723613
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  30723560 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 30723613  T

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Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 49093660 - 49093607
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    |||||||||||||||||||| |||||||||||  ||||| || |||||||||||    
T  49093660 cctcctcagcctctgggctctcctcctggtcagaatcggcgcgatctgctccct 49093607  T

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Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 185
Target Start/End: Complemental strand, 12892139 - 12892100
Alignment:
Q  146 gcctcctcagcctctgggctcgcctcctggtcaatatcgg 185  Q
    |||||||| |||||||| ||||||||||||||||||||||    
T  12892139 gcctcctcggcctctggcctcgcctcctggtcaatatcgg 12892100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 216
Target Start/End: Original strand, 55278591 - 55278681
Alignment:
Q  126 ctgctcctgcttgacatgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||||| | | |||| || |||||| ||||| || |||||||| |||||||||||||||  || |||||||||| |||  ||||||||    
T  55278591 ctgctcctgatcggcatgttgtctcctcggcctccggcctcgcctcttggtcaatatcggtgtgatatgctccctaatatggtgcatggcc 55278681  T

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Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 31424978 - 31424925
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| |  |||||||||||    
T  31424978 cctcctcggcctctgggctctcctcctggtcaaaatcggcgtgatctgctccct 31424925  T

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Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 44674664 - 44674717
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||| |||||||||| ||||| ||||| || |||||||||||    
T  44674664 cctcctcggcctctggcctcgcctcctagtcaaaatcggcgcgatctgctccct 44674717  T

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Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 50020523 - 50020592
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    |||||||||||| ||| |||||||||||||||| ||||| || || |||||| ||| ||| | |||||||    
T  50020523 cctcctcagcctttggcctcgcctcctggtcaagatcggcgcgatttgctccataagatggctcatggcc 50020592  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 14317841 - 14317773
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggc 215  Q
    |||||||  ||||||| |||||||||||| ||| ||||| || |||||||| |||||||| | ||||||    
T  14317841 cctcctcgtcctctggcctcgcctcctggccaacatcggcgcgatctgctctctaacatggctcatggc 14317773  T

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Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 124 - 216
Target Start/End: Complemental strand, 22501097 - 22501005
Alignment:
Q  124 tgctgctcctgcttgacatgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||||||||| | |||||||||||||| ||||| ||  ||||||||| |||||||||||||| ||||||||||||||||| |||| ||||    
T  22501097 tgctgctcctgctcggcatgctgcctcctcggcctccggcatcgcctcctagtcaatatcggtgctatctgctccctaacatggcgcaaggcc 22501005  T

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Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 30761097 - 30761166
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| |||||||||||| ||||||||| || ||||||||||||||||| | |||||||    
T  30761097 cctcctcggcctctggcctcgcctcctggccaatatcggcgcgatctgctccctaacatggctcatggcc 30761166  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 34819435 - 34819494
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||||||| |||||||||||||||| ||||| || |||||||||||||||||    
T  34819435 cctcctcggcctctggcctcgcctcctggtcaagatcggcgcgatctgctccctaacatg 34819494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 15033584 - 15033637
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||    
T  15033584 cctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccct 15033637  T

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Target: chr8; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 40075525 - 40075584
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||||||| |||||||| ||||||| ||||| || |||||||||||||||||    
T  40075525 cctcctcggcctctggcctcgcctcatggtcaagatcggcgcgatctgctccctaacatg 40075584  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 486552 - 486605
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  486552 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 486605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 1055764 - 1055711
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  1055764 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 1055711  T

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Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 215
Target Start/End: Original strand, 12716102 - 12716170
Alignment:
Q  146 gcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggc 215  Q
    |||||||| |||||||| ||||||||||  |||||||||| || ||||||||||||||||| | ||||||    
T  12716102 gcctcctcggcctctggcctcgcctccta-tcaatatcggcgcgatctgctccctaacatggctcatggc 12716170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 23019106 - 23019159
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  23019106 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 23019159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 26662685 - 26662632
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  26662685 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 26662632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 42482325 - 42482378
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  42482325 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 42482378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 5301144 - 5301203
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||||||| |||||||||| ||||| ||||| || |||| ||||||||||||    
T  5301144 cctcctcggcctctggcctcgcctcctagtcaagatcggcgcgatctactccctaacatg 5301203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 35554820 - 35554761
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||||||  |||||||||||||||| |||||  | |||||||||||||||||    
T  35554820 cctcctcggcctctgtcctcgcctcctggtcaaaatcggcacgatctgctccctaacatg 35554761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 41239373 - 41239426
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||| |||||||||||||||| |||||  | |||||||||||    
T  41239373 cctcctcggcctctggcctcgcctcctggtcaaaatcggcacgatctgctccct 41239426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 199
Target Start/End: Original strand, 39831570 - 39831622
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccc 199  Q
    ||||||| |||||||| |||||||||||||||| || || || ||||||||||    
T  39831570 cctcctcggcctctggcctcgcctcctggtcaagataggcgcgatctgctccc 39831622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 1e-18; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 17747510 - 17747581
Alignment:
Q  145 tgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||||| ||||  |||||||||| |||||||||||||||||| |||||||||||||||| |||||||||    
T  17747510 tgcctcctcggcctacgggctcgccttctggtcaatatcggtgcattctgctccctaacatggcgcatggcc 17747581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 140 - 216
Target Start/End: Original strand, 22726562 - 22726638
Alignment:
Q  140 catgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||||||| || ||||| || ||||||||||||||||||| ||||| ||||||||||||| ||| |||||||||    
T  22726562 catgctgcctcttcggcctccggcctcgcctcctggtcaatatgggtgcgatctgctccctaaaatggcgcatggcc 22726638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 24 - 71
Target Start/End: Original strand, 17747417 - 17747465
Alignment:
Q  24 aagaaaccaacaaatgcc-acaaaaactaaaaacaagtcataaacataa 71  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||||    
T  17747417 aagaaaccaacaaatccctacaaaaactaaaaacaagtcataaacataa 17747465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 145 - 216
Target Start/End: Original strand, 27450505 - 27450576
Alignment:
Q  145 tgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||||| |||||||| |||||||||||||||| || || || ||||||||||||| ||| | |||||||    
T  27450505 tgcctcctcggcctctggcctcgcctcctggtcaagataggcgcgatctgctccctaagatgactcatggcc 27450576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 5538370 - 5538423
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||| |||||||||||||||| ||||| || |||||||||||    
T  5538370 cctcctcggcctctggcctcgcctcctggtcaaaatcggcgcgatctgctccct 5538423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 9368221 - 9368274
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  9368221 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 9368274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 15071102 - 15071155
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  15071102 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 15071155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 35607210 - 35607263
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  35607210 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 35607263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 36980778 - 36980709
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| |||||||||||| ||||||||| || |||| ||| |||||||| | |||||||    
T  36980778 cctcctcggcctctggtctcgcctcctggccaatatcggcgcgatcttctctctaacatggctcatggcc 36980709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 41883778 - 41883725
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  41883778 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 41883725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 48406596 - 48406543
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  48406596 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 48406543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 17460081 - 17460134
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| ||||||||| || ||||| || |||||||||||    
T  17460081 cctcctcggcctctgggctctcctcctggtaaaaatcggcgcgatctgctccct 17460134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 17593133 - 17593080
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| ||||||||| || ||||| || |||||||||||    
T  17593133 cctcctcggcctctgggctctcctcctggtaaaaatcggcgcgatctgctccct 17593080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 47521796 - 47521865
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| |||||||||||||||| |  || || ||||||||||||| ||| | |||||||    
T  47521796 cctcctcggcctctggcctcgcctcctggtcaagacaggcgcgatctgctccctaagatggctcatggcc 47521865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 11)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 15939874 - 15939804
Alignment:
Q  146 gcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    |||||||| |||||||| |||||||||||  ||||||||| || ||||||||||||||||| |||||||||    
T  15939874 gcctcctcggcctctggcctcgcctcctgaccaatatcggcgcgatctgctccctaacatggcgcatggcc 15939804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 42937481 - 42937550
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    |||||||||||||||| |||||||||| |  |||||||| |||||||||||||||||||| | |||||||    
T  42937481 cctcctcagcctctggcctcgcctccttgctaatatcggcgcaatctgctccctaacatggctcatggcc 42937550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 8482 - 8535
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| ||||||||||||||||||||||||| ||||| || |||||||||||    
T  8482 cctcctcggcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccct 8535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 511447 - 511506
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||| ||| |||||||||||||||| |||||||| |||| ||||||||||||    
T  511447 cctcctcggcctttggcctcgcctcctggtcaagatcggtgcgatctactccctaacatg 511506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 147 - 198
Target Start/End: Complemental strand, 7761781 - 7761730
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctcc 198  Q
    ||||||| |||||||| |||||||||||||||| |||||||| |||||||||    
T  7761781 cctcctcggcctctggcctcgcctcctggtcaaaatcggtgcgatctgctcc 7761730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 28879836 - 28879783
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  28879836 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 28879783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 30708285 - 30708232
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  30708285 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 30708232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Complemental strand, 5199998 - 5199943
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaa 202  Q
    ||||||| ||||||||  ||||||||||||||| ||||| || |||||||||||||    
T  5199998 cctcctcggcctctggcttcgcctcctggtcaagatcggcgcgatctgctccctaa 5199943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 38971273 - 38971214
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||| ||| |||||||| ||||||| ||||| || |||||||||||||||||    
T  38971273 cctcctcggcctttggcctcgcctcttggtcaagatcggcgcgatctgctccctaacatg 38971214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 155 - 200
Target Start/End: Original strand, 28238560 - 28238605
Alignment:
Q  155 gcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    |||||||||||| |||||||||||| ||||| || |||||||||||    
T  28238560 gcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 28238605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 38407670 - 38407723
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||| ||| |||||||||||||||| ||||| || |||||||||||    
T  38407670 cctcctcggcctatggcctcgcctcctggtcaaaatcggcgcgatctgctccct 38407723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 155 - 216
Target Start/End: Complemental strand, 21603605 - 21603544
Alignment:
Q  155 gcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||| || ||||||||||||||||||||||||| |||||||| |||||||| |||||||||    
T  21603605 gcctccggactcgcctcctggtcaatatcggtgcgatctgctctctaacatggcgcatggcc 21603544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 6204387 - 6204334
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  6204387 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 6204334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 11691354 - 11691301
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  11691354 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 11691301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 22304468 - 22304415
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  22304468 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 22304415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 27638986 - 27638933
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  27638986 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 27638933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 30826437 - 30826490
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  30826437 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 30826490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 31771294 - 31771225
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| |||||||||||||||| ||||| |  ||||||||||||| ||| | |||||||    
T  31771294 cctcctcggcctctggcctcgcctcctggtcaaaatcggcgtgatctgctccctaatatggctcatggcc 31771225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Original strand, 2405876 - 2405935
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||||| | |||||||||||||||| ||||| || ||||||||| |||||||    
T  2405876 cctcctcggcctctagcctcgcctcctggtcaagatcggcgcgatctgctccgtaacatg 2405935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Original strand, 24885466 - 24885517
Alignment:
Q  155 gcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    |||||||| ||||||||||| |||| |||||||| ||| |||||||||||||    
T  24885466 gcctctggcctcgcctcctgctcaagatcggtgcgatccgctccctaacatg 24885517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 142 - 216
Target Start/End: Complemental strand, 3502225 - 3502151
Alignment:
Q  142 tgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    |||| ||||||| |||||||| |||||||||||||||| || || |  ||||||||||||| ||| | |||||||    
T  3502225 tgcttcctcctcggcctctggcctcgcctcctggtcaagataggcgtgatctgctccctaagatggctcatggcc 3502151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 6637911 - 6637980
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| ||| |||||||||||||||||| || ||||||||||||||||| | |||||||    
T  6637911 cctcctcggcctctggtctcccctcctggtcaatatcggcgcgatctgctccctaacatggctcatggcc 6637980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 141 - 205
Target Start/End: Original strand, 25514867 - 25514931
Alignment:
Q  141 atgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacat 205  Q
    ||||||||||||| |||||||| |||||||||||| ||||||||| || ||||||||| ||||||    
T  25514867 atgctgcctcctcggcctctggcctcgcctcctggccaatatcggcgcgatctgctccataacat 25514931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 3938358 - 3938411
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  3938358 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 3938411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 15834494 - 15834441
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  15834494 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 15834441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 30493780 - 30493833
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  30493780 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 30493833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 39950726 - 39950673
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| ||||||||| ||||||||||||||| ||||| || |||||||||||    
T  39950726 cctcctcggcctctgggttcgcctcctggtcaaaatcggcgcgatctgctccct 39950673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 43536523 - 43536576
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    |||||||||||||||| ||| |||||||||||| ||||| || |||||||||||    
T  43536523 cctcctcagcctctggactctcctcctggtcaaaatcggcgcgatctgctccct 43536576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 43981759 - 43981706
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  43981759 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 43981706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 145 - 214
Target Start/End: Original strand, 17513324 - 17513393
Alignment:
Q  145 tgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatgg 214  Q
    |||||| || ||||| || |||||||||||||| |||||||||| ||||||||||||||||| |||||||    
T  17513324 tgcctcatcggcctccggactcgcctcctggtccatatcggtgctatctgctccctaacatggcgcatgg 17513393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 51337136 - 51337067
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    |||||||||||||||| |||||||||||| ||||||||| || |||||||| |||||||| | |||||||    
T  51337136 cctcctcagcctctggcctcgcctcctggccaatatcggcgcgatctgctctctaacatggctcatggcc 51337067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 19159250 - 19159205
Alignment:
Q  155 gcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||||||||||||||||||||| ||||| || |||||||||||    
T  19159250 gcctctgggctcgcctcctggtcaaaatcggcgcgatctgctccct 19159205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 26878947 - 26878894
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  26878947 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 26878894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 50617711 - 50617764
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||| | |||||||||||||||| |||||||| |||||||||||    
T  50617711 cctcctcggcctctagcctcgcctcctggtcaaaatcggtgcgatctgctccct 50617764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 155 - 206
Target Start/End: Complemental strand, 45828799 - 45828748
Alignment:
Q  155 gcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    |||||| | |||||||||||||||| ||||| || |||||||||||||||||    
T  45828799 gcctctagcctcgcctcctggtcaagatcggcgcgatctgctccctaacatg 45828748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 164 - 206
Target Start/End: Complemental strand, 47661087 - 47661045
Alignment:
Q  164 ctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    |||||||||||||||| ||||| || |||||||||||||||||    
T  47661087 ctcgcctcctggtcaagatcggcgcgatctgctccctaacatg 47661045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 94927 - 94996
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||| | |||||||||||||||| || || || ||||||||||||| ||| | |||||||    
T  94927 cctcctcggcctctagcctcgcctcctggtcaagataggcgcgatctgctccctaagatggctcatggcc 94996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 3729162 - 3729215
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| || || || |||||||||||    
T  3729162 cctcctcggcctctgggctctcctcctggtcaaaattggcgcgatctgctccct 3729215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 13636819 - 13636872
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| |  |||||||||||    
T  13636819 cctcctcggcctctgggctctcctcctggtcaaaatcggcgtgatctgctccct 13636872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 19522106 - 19522159
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||| |||||||| ||||||| ||||| || |||||||||||    
T  19522106 cctcctcggcctctggcctcgcctcttggtcaaaatcggcgcgatctgctccct 19522159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 21144167 - 21144114
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||| |||||||||||||||| ||| | || |||||||||||    
T  21144167 cctcctcggcctctggcctcgcctcctggtcaaaatcagcgcgatctgctccct 21144114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 22527232 - 22527163
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| |||||||||||||||| || || || ||||||||| ||| ||| | |||||||    
T  22527232 cctcctcggcctctggcctcgcctcctggtcaagataggcgcgatctgctccttaagatggctcatggcc 22527163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 31780486 - 31780539
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||| |||||||||||||||||| ||||| || ||||| |||||    
T  31780486 cctcctcggcctctaggctcgcctcctggtcaaaatcggcgcgatctgttccct 31780539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0117 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0117
Description:

Target: scaffold0117; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 19244 - 19308
Alignment:
Q  142 tgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    |||||||||||| ||||| ||||||||||||||| |||||| ||||  |||||||||||||||||    
T  19244 tgctgcctcctcggcctccgggctcgcctcctggccaatattggtgtgatctgctccctaacatg 19308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 147 - 216
Target Start/End: Complemental strand, 41615487 - 41615418
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| ||| |||||||||||| ||||| |||||||||||||||| ||| | |||||||    
T  41615487 cctcctcggcctctggcctcacctcctggtcaagatcggcgcaatctgctccctaagatggctcatggcc 41615418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 206
Target Start/End: Complemental strand, 12373949 - 12373870
Alignment:
Q  127 tgctcctgcttgacatgctgcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    |||||||||| | ||||||||||||||  |||| |  ||||||||||||||||||||| ||  || ||||||||||||||    
T  12373949 tgctcctgctcggcatgctgcctcctcgacctccgacctcgcctcctggtcaatatcgatgatatttgctccctaacatg 12373870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 2648391 - 2648444
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  2648391 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 2648444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 161 - 206
Target Start/End: Complemental strand, 12672658 - 12672613
Alignment:
Q  161 gggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    |||||||||||||||||| ||| ||||| |||||||||||||||||    
T  12672658 gggctcgcctcctggtcattattggtgctatctgctccctaacatg 12672613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 34048663 - 34048610
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  34048663 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 34048610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 42900975 - 42901028
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  42900975 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 42901028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 46698130 - 46698183
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  46698130 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 46698183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 49141345 - 49141398
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  49141345 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 49141398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 147 - 200
Target Start/End: Complemental strand, 54389363 - 54389310
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||||| || |||||||||||    
T  54389363 cctcctcggcctctgggctctcctcctggtcaaaatcggcgcgatctgctccct 54389310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 206
Target Start/End: Complemental strand, 48566052 - 48565993
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatg 206  Q
    ||||||| |||||||| ||  |||||||||||| ||||| || |||||||||||||||||    
T  48566052 cctcctcggcctctggcctaccctcctggtcaagatcggcgcgatctgctccctaacatg 48565993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 147 - 202
Target Start/End: Original strand, 49266184 - 49266239
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaa 202  Q
    ||||||| |||||||| |||||||||||||||| |  || ||||||||||||||||    
T  49266184 cctcctcggcctctggcctcgcctcctggtcaagacaggcgcaatctgctccctaa 49266239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 204
Target Start/End: Complemental strand, 6928346 - 6928300
Alignment:
Q  158 tctgggctcgcctcctggtcaatatcggtgcaatctgctccctaaca 204  Q
    ||||| |||||||||||||||| ||||| || |||||||||||||||    
T  6928346 tctggcctcgcctcctggtcaagatcggcgcgatctgctccctaaca 6928300  T

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Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 216
Target Start/End: Original strand, 16861591 - 16861660
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccctaacatgtcgcatggcc 216  Q
    ||||||| |||||||| ||||||||||| |||| ||| | ||||||||||| |||| ||| | |||||||    
T  16861591 cctcctcggcctctggcctcgcctcctgttcaagatcagcgcaatctgctctctaagatggctcatggcc 16861660  T

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Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 47071001 - 47071054
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| ||||||||  ||||||||||||||| ||||| || |||||||||||    
T  47071001 cctcctcggcctctggcatcgcctcctggtcaaaatcggcgcgatctgctccct 47071054  T

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Target: chr3; HSP #15
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 50477592 - 50477645
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||||||| |||||||||||| ||| | || |||||||||||    
T  50477592 cctcctcggcctctgggctctcctcctggtcaaaatcagcgcgatctgctccct 50477645  T

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Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 147 - 200
Target Start/End: Original strand, 52388428 - 52388481
Alignment:
Q  147 cctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctgctccct 200  Q
    ||||||| |||||||| |||||||||||||||| || || || |||||||||||    
T  52388428 cctcctcggcctctggcctcgcctcctggtcaagattggcgcgatctgctccct 52388481  T

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Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 146 - 194
Target Start/End: Original strand, 26334793 - 26334841
Alignment:
Q  146 gcctcctcagcctctgggctcgcctcctggtcaatatcggtgcaatctg 194  Q
    |||||||| |||||||| |||| ||||||||||||||||| || |||||    
T  26334793 gcctcctcggcctctggcctcgtctcctggtcaatatcggcgcgatctg 26334841  T

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