View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9112_low_6 (Length: 616)
Name: NF9112_low_6
Description: NF9112
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9112_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 491; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 491; E-Value: 0
Query Start/End: Original strand, 18 - 607
Target Start/End: Complemental strand, 33278027 - 33277436
Alignment:
| Q |
18 |
tgaagaaccatggtgactactctcatttccatttttagagannnnnnn--gcatgattaattcaatcttatcatttactaaatattggtgtatgatctcc |
115 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||| | ||||||||||||||||| |
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| T |
33278027 |
tgaagaaccatggtgactactctcatttccatttttagagatttgtttttgcatgattaattcaatcttatcgtttactatagattggtgtatgatctcc |
33277928 |
T |
|
| Q |
116 |
atataggtatggaattgagcaagaatacaccttgttgcagaaagatgtacactggcctcttggatggcctaagggcggttttcctggacctcaggtgaaa |
215 |
Q |
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||| |||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33277927 |
atacaggtatggtattgagcaagaatacaccttgttgcagaaagatgcacactggcctcttggatggcctaagggcggttttcctggacctcaggtgaaa |
33277828 |
T |
|
| Q |
216 |
actcttttacacttgtttggtgttccgttcnnnnnnnatcaaatagtttggtggagagaatcacacactaagtgtgtagaagtgtggaattccgggtttc |
315 |
Q |
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|||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
33277827 |
actcttttacacttgtttggtgttccattctttttttgtcaaatagtttggtggagagaatcacacactaagtgtgtagaattgtggaattccgggtttc |
33277728 |
T |
|
| Q |
316 |
aaccctagagatttactctttttgtttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacatt |
415 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33277727 |
aaccctaaagatttactctttttgtttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacatt |
33277628 |
T |
|
| Q |
416 |
acaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccacaattt |
515 |
Q |
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| T |
33277627 |
acaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggtatgtaagtttaaacatttgatgttccacaattt |
33277528 |
T |
|
| Q |
516 |
tgacattcacattttatgttacatttttaatttaatttgattgttatatgtagtgggaatttcaagtaggtccagttgttggcatctctgct |
607 |
Q |
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| T |
33277527 |
tgacattcacaatttatgttacatttttaatttaatttgattggtatatgtagtgggaatttcaagtaggtccagttgttggcatctctgct |
33277436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 67; Significance: 2e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 340 - 474
Target Start/End: Complemental strand, 29442226 - 29442092
Alignment:
| Q |
340 |
tttgctgaatagggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggca |
439 |
Q |
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| T |
29442226 |
tttgctcaatagggaccatactattgtggtgctggtgctgacaaggcatttggccgtgacattgttgactcacattacaaagcctgtctttatgccggca |
29442127 |
T |
|
| Q |
440 |
ttaacatcagtggtgttaatggagaagttatgcct |
474 |
Q |
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| T |
29442126 |
tcaacatcagtggaatcaatggtgaagtgatgcct |
29442092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 119 - 219
Target Start/End: Complemental strand, 29442553 - 29442453
Alignment:
| Q |
119 |
taggtatggaattgagcaagaatacaccttgttgcagaaagatgtacactggcctcttggatggcctaagggcggttttcctggacctcaggtgaaaact |
218 |
Q |
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||||||||| ||||| |||||||||||||||||||||||||| | ||||||||||||| ||||| || ||||||||||||||||||||||||||| |
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| T |
29442553 |
taggtatggtattgaacaagaatacaccttgttgcagaaagacatcaactggcctcttggttggccagttggtggttttcctggacctcaggtgaaaact |
29442454 |
T |
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| Q |
219 |
c |
219 |
Q |
| |
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|
| T |
29442453 |
c |
29442453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 55; Significance: 3e-22; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 350 - 484
Target Start/End: Complemental strand, 26249334 - 26249200
Alignment:
| Q |
350 |
agggaccatactattgtggtgttggtgctgaaaaggcattagggcgtgatattgttgatgcacattacaaagcatgcctttatgctggcattaacatcag |
449 |
Q |
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|||| ||||| |||||||| |||||||||| || || | || ||||| ||||||||||||||||||||||| || |||||||||||||||||||| || |
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| T |
26249334 |
agggcccatattattgtgggattggtgctgataaagcctatggtcgtgacattgttgatgcacattacaaagcttgtctttatgctggcattaacattag |
26249235 |
T |
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| Q |
450 |
tggtgttaatggagaagttatgcctagccaggtat |
484 |
Q |
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||| | |||||||| ||||||||| | ||||||| |
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| T |
26249234 |
tggcatcaatggagaggttatgcctggtcaggtat |
26249200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 161
Target Start/End: Complemental strand, 26249773 - 26249732
Alignment:
| Q |
120 |
aggtatggaattgagcaagaatacaccttgttgcagaaagat |
161 |
Q |
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||||||||||||||||||||||| || || |||||||||||| |
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| T |
26249773 |
aggtatggaattgagcaagaatatacattattgcagaaagat |
26249732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 405 - 483
Target Start/End: Complemental strand, 7192841 - 7192763
Alignment:
| Q |
405 |
tgatgcacattacaaagcatgcctttatgctggcattaacatcagtggtgttaatggagaagttatgcctagccaggta |
483 |
Q |
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| T |
7192841 |
tgatgctcattacaaggcttgtttatatgctggaattaacatcagtggtactaatgcagaggttatgcctggccaggta |
7192763 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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