View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9113_low_1 (Length: 416)
Name: NF9113_low_1
Description: NF9113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9113_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 222 - 400
Target Start/End: Complemental strand, 7257983 - 7257805
Alignment:
| Q |
222 |
gggaagtaattagatgtggtccaacatcacatgggcagaagaagagggtcatgaacagacattttaatgacagctagaagatttattgttgtgtcaacaa |
321 |
Q |
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| T |
7257983 |
gggaagtaattagatgtggtccaacatcacatgggcagaagaagagggtcatgaacagacattttaatgacagctagaagatttattgttgtgtcaacaa |
7257884 |
T |
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| Q |
322 |
gaaccatatgtatatttgtggacaagagaacagtccttcatgctaagatttcttatcagcatcatttggtatagaacac |
400 |
Q |
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| T |
7257883 |
gaaccatatgtatatttgtggacaagagaacagtccttcatgctaagatttcttatcagcatcatttggtatagaacac |
7257805 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 158; E-Value: 6e-84
Query Start/End: Original strand, 22 - 183
Target Start/End: Complemental strand, 7258184 - 7258023
Alignment:
| Q |
22 |
gttagcattttcgttaaaatatatatatgtcatcaatctacatcattttgaatataacaacccacaaatacgtcatgtcaagaagttaattaagaaaaac |
121 |
Q |
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| T |
7258184 |
gttagcattttccttaaaatatatatatgtcatcaatctacatcattttgaatataacaacccacaaatacgtcatgtcaagaagttaattaagaaaaac |
7258085 |
T |
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| Q |
122 |
agtttacagacaaagcaattattttccttaattttagagaaccaggtaatgtttttcatggt |
183 |
Q |
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| T |
7258084 |
agtttacagacaaagcaattattttccttaattttagagaaccaggtaatgtttttcatggt |
7258023 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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