View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9113_low_10 (Length: 256)
Name: NF9113_low_10
Description: NF9113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9113_low_10 |
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Alignment Details
Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 44034942 - 44034700
Alignment:
| Q |
1 |
ttgatcaaaagattaggataatacaaaatctcttatctttgaccaaaattggagtgatgagttataaactcttctaccnnnnnnntatagctttagcctt |
100 |
Q |
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| T |
44034942 |
ttgatcaaaagattaggataatacaaaatctcttatctttgaccaaaattggagtgatgagttataaactcttctaccaaaaaaatatagctttagcctt |
44034843 |
T |
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| Q |
101 |
taaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcctatgaaaacagcaggtacagttggt |
200 |
Q |
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| T |
44034842 |
taaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcctatgaaaacagcaggtacagttggt |
44034743 |
T |
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| Q |
201 |
ctacgtccaagctgaatcagtgctctctctatttgatgtccat |
243 |
Q |
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| T |
44034742 |
ctacgtccaagctgaatcagtgctctctctatttgttgtccat |
44034700 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 155 - 200
Target Start/End: Complemental strand, 44028339 - 44028294
Alignment:
| Q |
155 |
accacctatgaattgttgtcctatgaaaacagcaggtacagttggt |
200 |
Q |
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| T |
44028339 |
accacctctgaattgttgtcctatgaaaacagcaggtacacttggt |
44028294 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 94 - 234
Target Start/End: Original strand, 39828429 - 39828569
Alignment:
| Q |
94 |
tagcctttaaaagcaattgaacaagtttgttctgaacattgaggcttatgagttcatcaataccacctatgaattgttgtcctatgaaaacagcaggtac |
193 |
Q |
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| T |
39828429 |
tagccttcaaaagcaactgagcaagcttattttggacattgaggcttatgacttgattaacaccacctacaaattgttgtcctataaacacagctggcac |
39828528 |
T |
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| Q |
194 |
agttggtctacgtccaagctgaatcagtgctctctctattt |
234 |
Q |
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| T |
39828529 |
acttggtcgacaaccaagctgaaccaatgcactttctattt |
39828569 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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