View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9113_low_12 (Length: 237)

Name: NF9113_low_12
Description: NF9113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9113_low_12
NF9113_low_12
[»] chr4 (7 HSPs)
chr4 (1-237)||(41668689-41668925)
chr4 (171-226)||(19936297-19936352)
chr4 (171-237)||(7372669-7372735)
chr4 (175-236)||(51880452-51880514)
chr4 (175-237)||(53423288-53423350)
chr4 (171-236)||(40303481-40303546)
chr4 (171-237)||(23806118-23806189)
[»] chr3 (7 HSPs)
chr3 (171-237)||(43790677-43790743)
chr3 (162-237)||(9107056-9107131)
chr3 (166-220)||(46786686-46786740)
chr3 (175-231)||(6784822-6784878)
chr3 (161-237)||(1543197-1543273)
chr3 (175-234)||(39328611-39328670)
chr3 (171-223)||(54525385-54525437)
[»] chr8 (1 HSPs)
chr8 (164-237)||(32237003-32237076)
[»] chr1 (9 HSPs)
chr1 (171-226)||(34454146-34454201)
chr1 (162-237)||(27664086-27664166)
chr1 (171-232)||(23165940-23166001)
chr1 (175-237)||(5450641-5450703)
chr1 (183-237)||(42312930-42312984)
chr1 (171-235)||(7230413-7230477)
chr1 (171-219)||(35938541-35938589)
chr1 (201-237)||(5450418-5450454)
chr1 (201-237)||(6587133-6587169)
[»] chr7 (10 HSPs)
chr7 (171-237)||(27746615-27746681)
chr7 (163-237)||(37808026-37808100)
chr7 (166-237)||(20246659-20246730)
chr7 (163-237)||(3412116-3412189)
chr7 (172-232)||(23999144-23999205)
chr7 (201-237)||(26772608-26772644)
chr7 (192-236)||(36683928-36683972)
chr7 (178-237)||(30275289-30275348)
chr7 (171-203)||(8024580-8024612)
chr7 (170-237)||(24163856-24163928)
[»] chr6 (3 HSPs)
chr6 (171-237)||(4349892-4349958)
chr6 (171-237)||(4350131-4350197)
chr6 (177-234)||(14333978-14334034)
[»] chr2 (5 HSPs)
chr2 (166-237)||(14902266-14902337)
chr2 (175-237)||(24026727-24026789)
chr2 (163-234)||(6584307-6584379)
chr2 (175-236)||(35664557-35664618)
chr2 (166-218)||(25642767-25642819)
[»] chr5 (3 HSPs)
chr5 (171-237)||(23127187-23127258)
chr5 (171-218)||(3375685-3375732)
chr5 (171-218)||(3400749-3400796)
[»] scaffold0027 (1 HSPs)
scaffold0027 (175-236)||(34417-34478)


Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 41668689 - 41668925
Alignment:
Q  1 taaccaaatgcagtggttttactgtatgcaacaccttgggttcttatgtgtcaattggatggagattttacttaactaagatactacttgcactgtgaac 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41668689 taaccaaatgcagtggttttactgtatgcaacaccttgggttcttatgtgtcaattggatggagattttacttaactaagatactacttgcactgtgaac 41668788  T
Q  101 gaaactagnnnnnnnnaccgtgattctcaagtactgttttcaattgtgactaatgctttagtcagggccttttctgagattttggtggcctagggcgaac 200  Q
    ||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41668789 gaaactagtttttgttaccgtgattctcaagtactgttttcaattgtgactaatgctttagtcagggccttttctgagattttggtggcctagggcgaac 41668888  T
Q  201 ctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||||||||||||||||||||||||||||||||||    
T  41668889 ctataatttgggtcctaactaataaatatatataaac 41668925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 19936352 - 19936297
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaa 226  Q
    |||||||||||||||||| ||||| |||||||| ||||||||||||||||||||||    
T  19936352 tttctgagattttggtggtctaggacgaacctacaatttgggtcctaactaataaa 19936297  T

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Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 7372735 - 7372669
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||||||||   |||| ||||||||||||| ||||||| || ||||||||||||||||||||||    
T  7372735 tttctgagatttcaatggcttagggcgaacctacaatttggatcttaactaataaatatatataaac 7372669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 51880452 - 51880514
Alignment:
Q  175 tgagattttggtggccta-gggcgaacctataatttgggtcctaactaataaatatatataaa 236  Q
    ||||||| |||||||||| |||||||||||||||||||| |||||||||||| || |||||||    
T  51880452 tgagattctggtggcctaagggcgaacctataatttgggccctaactaataagtacatataaa 51880514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 53423350 - 53423288
Alignment:
Q  175 tgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||||||||||  ||||  ||||||| ||||| |||||||||||||||||||||||||||    
T  53423350 tgagattttggtggtataggatgaacctacaatttaggtcctaactaataaatatatataaac 53423288  T

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Target: chr4; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 236
Target Start/End: Original strand, 40303481 - 40303546
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaa 236  Q
    |||||||||||||||| |||||| | |||| || |||||||  |||||||||||||||||||||||    
T  40303481 tttctgagattttggttgcctagagtgaacttacaatttggaccctaactaataaatatatataaa 40303546  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 23806118 - 23806189
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggt-----cctaactaataaatatatataaac 237  Q
    |||||||||||||| ||| |||||  ||||||| |||||||||     ||||||||||||||||||||||||    
T  23806118 tttctgagattttgatggtctaggttgaacctacaatttgggtcataacctaactaataaatatatataaac 23806189  T

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Target: chr3 (Bit Score: 55; Significance: 1e-22; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 171 - 237
Target Start/End: Complemental strand, 43790743 - 43790677
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||| |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||    
T  43790743 tttctaagattttggtggcctagggcgaacttacaatttgggtcctaactaataaatatatataaac 43790677  T

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Target: chr3; HSP #2
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 162 - 237
Target Start/End: Original strand, 9107056 - 9107131
Alignment:
Q  162 tcagggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||||| ||||| || ||||||||||||||||||||||||  |||||| || ||||||||||||||||||||||    
T  9107056 tcagggccgtttctaagtttttggtggcctagggcgaacctaccatttggatcataactaataaatatatataaac 9107131  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 166 - 220
Target Start/End: Original strand, 46786686 - 46786740
Alignment:
Q  166 ggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaact 220  Q
    |||| ||||||||||||||||||||||||||||||||| ||||||| || |||||    
T  46786686 ggccgtttctgagattttggtggcctagggcgaacctacaatttggatcttaact 46786740  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 175 - 231
Target Start/End: Complemental strand, 6784878 - 6784822
Alignment:
Q  175 tgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatat 231  Q
    |||||||||||||| ||| ||||||| || ||||||||| |||||||||||||||||    
T  6784878 tgagattttggtggtctatggcgaacttacaatttgggttctaactaataaatatat 6784822  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 161 - 237
Target Start/End: Original strand, 1543197 - 1543273
Alignment:
Q  161 gtcagggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||| |||| ||| |||||||||| ||| |||  ||||||||| ||||||  |||||||||||||||||||| ||||    
T  1543197 gtcacggccgtttatgagattttgatggtctaaagcgaacctacaatttgaatcctaactaataaatatataaaaac 1543273  T

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Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 175 - 234
Target Start/End: Complemental strand, 39328670 - 39328611
Alignment:
Q  175 tgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatata 234  Q
    |||||||| ||||| |||||| ||||||| || || |||||||||||||| |||||||||    
T  39328670 tgagatttcggtggtctagggtgaacctacaaattaggtcctaactaatatatatatata 39328611  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 223
Target Start/End: Complemental strand, 54525437 - 54525385
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaat 223  Q
    ||||||||||||| || | ||| | ||||||||||||||||||||||| ||||    
T  54525437 tttctgagattttagtagtctaagacgaacctataatttgggtcctaaataat 54525385  T

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Target: chr8 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 164 - 237
Target Start/End: Complemental strand, 32237076 - 32237003
Alignment:
Q  164 agggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||| |||||||||| ||||||||||| | |||||||| |||||||||||||||||||||||||||||||||    
T  32237076 agggccgtttctgagatattggtggcctaagacgaacctacaatttgggtcctaactaataaatatatataaac 32237003  T

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Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 171 - 226
Target Start/End: Complemental strand, 34454201 - 34454146
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaa 226  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  34454201 tttctgagattttggtggcctagggcgaacctacaatttgggtcctaactaataaa 34454146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 162 - 237
Target Start/End: Complemental strand, 27664166 - 27664086
Alignment:
Q  162 tcagggccttttctgagattttggtggcctagggcgaacctataatttgggtcc-----taactaataaatatatataaac 237  Q
    |||||||| ||||||||||||||||||||||||| ||||||| |||||||||||     ||||||||||||||||||||||    
T  27664166 tcagggccgtttctgagattttggtggcctagggagaacctacaatttgggtcctaacctaactaataaatatatataaac 27664086  T

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Target: chr1; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 171 - 232
Target Start/End: Complemental strand, 23166001 - 23165940
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatata 232  Q
    |||||||||||||||||| ||||||||||||||||||||   |||||| |||||||||||||    
T  23166001 tttctgagattttggtggtctagggcgaacctataatttaaatcctaattaataaatatata 23165940  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 175 - 237
Target Start/End: Original strand, 5450641 - 5450703
Alignment:
Q  175 tgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||||||| ||| |||  ||||| ||||||||||| || ||||||||||||||||||||||    
T  5450641 tgagattttgatggtctatcgcgaatctataatttggatcataactaataaatatatataaac 5450703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 183 - 237
Target Start/End: Complemental strand, 42312984 - 42312930
Alignment:
Q  183 tggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||| ||||||||||||  ||||||| |||| ||||||||||||||||||||    
T  42312984 tggtggcttagggcgaacctgcaatttggatcctgactaataaatatatataaac 42312930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 235
Target Start/End: Complemental strand, 7230477 - 7230413
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataa 235  Q
    ||||| ||||||||||||  |||| |||||||| ||||||  | |||||||||||||||||||||    
T  7230477 tttctaagattttggtggtataggacgaacctacaatttgaattctaactaataaatatatataa 7230413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 171 - 219
Target Start/End: Complemental strand, 35938589 - 35938541
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaac 219  Q
    ||||||||||||||||||||||||  ||||||| ||||||| |||||||    
T  35938589 tttctgagattttggtggcctaggaagaacctacaatttggatcctaac 35938541  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 5450418 - 5450454
Alignment:
Q  201 ctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||||||| ||| ||||||||||||||||||||||    
T  5450418 ctataatttgagtcataactaataaatatatataaac 5450454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 201 - 237
Target Start/End: Complemental strand, 6587169 - 6587133
Alignment:
Q  201 ctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||||||||| ||||||||||||| |||||||||    
T  6587169 ctataatttgggttctaactaataaatctatataaac 6587133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 2e-20; HSPs: 10)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 27746615 - 27746681
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||||||||||||||||||||| ||| |||||||||| || |||||||||||||||||||||||    
T  27746615 tttctgagattttggtggcctagggtgaatctataatttgagtgctaactaataaatatatataaac 27746681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 37808026 - 37808100
Alignment:
Q  163 cagggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||| ||| ||||||||||||||  |||||||| |||||||||| |||||||||||||||||||||||||||    
T  37808026 cagggccgtttatgagattttggtggtttagggcgagcctataatttaggtcctaactaataaatatatataaac 37808100  T

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Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 20246659 - 20246730
Alignment:
Q  166 ggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||| ||| |||||||||||||||||| || ||||||||||||| |||| ||||||||||| ||||||||||    
T  20246659 ggccgtttatgagattttggtggcctatggtgaacctataatttaggtcataactaataaacatatataaac 20246730  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 163 - 237
Target Start/End: Original strand, 3412116 - 3412189
Alignment:
Q  163 cagggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||| |||||||||||||| ||| ||||| |||||||  ||||||||| ||||| |||||||||||||||||    
T  3412116 cagggccgtttctgagattttg-tggtctaggacgaacctgcaatttgggttctaacaaataaatatatataaac 3412189  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 172 - 232
Target Start/End: Complemental strand, 23999205 - 23999144
Alignment:
Q  172 ttctgagattttggtggccta-gggcgaacctataatttgggtcctaactaataaatatata 232  Q
    ||||||||||||| ||||||| ||||||| || ||||||||| |||||||||||| ||||||    
T  23999205 ttctgagattttgatggcctaagggcgaatctttaatttgggccctaactaataagtatata 23999144  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 201 - 237
Target Start/End: Original strand, 26772608 - 26772644
Alignment:
Q  201 ctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||||||||||| ||||||||||||||||||||||    
T  26772608 ctataatttgggtcttaactaataaatatatataaac 26772644  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 192 - 236
Target Start/End: Original strand, 36683928 - 36683972
Alignment:
Q  192 agggcgaacctataatttgggtcctaactaataaatatatataaa 236  Q
    |||| ||||||| ||||||||||||||||||||||| ||||||||    
T  36683928 agggtgaacctacaatttgggtcctaactaataaatttatataaa 36683972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 178 - 237
Target Start/End: Original strand, 30275289 - 30275348
Alignment:
Q  178 gattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||| |||| || ||||||| ||| ||||||| | |||||||||||||||||||||||    
T  30275289 gattttagtggtctggggcgaatctacaatttggattctaactaataaatatatataaac 30275348  T

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Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 171 - 203
Target Start/End: Original strand, 8024580 - 8024612
Alignment:
Q  171 tttctgagattttggtggcctagggcgaaccta 203  Q
    |||| ||||||||||||||||||||||||||||    
T  8024580 tttccgagattttggtggcctagggcgaaccta 8024612  T

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Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 170 - 237
Target Start/End: Complemental strand, 24163928 - 24163856
Alignment:
Q  170 ttttctgagattttggtggcctagggcgaacctataatttgggt-----cctaactaataaatatatataaac 237  Q
    |||||||||||||||||||| ||| | |||| || |||||||||     |||||||||||||||| |||||||    
T  24163928 ttttctgagattttggtggcttagtgtgaacatacaatttgggtcataacctaactaataaatatttataaac 24163856  T

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Target: chr6 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 4349892 - 4349958
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||||||    
T  4349892 tttctgagattttggtggcctagggcgaacccacaatttgggtcataactagtaaatatatataaac 4349958  T

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Target: chr6; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 4350131 - 4350197
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    ||||||||||||||||||||||||||||||| | |||||||||| |||||| |||||||||||||||    
T  4350131 tttctgagattttggtggcctagggcgaacccacaatttgggtcataactagtaaatatatataaac 4350197  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 177 - 234
Target Start/End: Complemental strand, 14334034 - 14333978
Alignment:
Q  177 agattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatata 234  Q
    ||||||||||||| ||||||||||||| |||||||||||||||||||| |||||||||    
T  14334034 agattttggtggc-tagggcgaacctacaatttgggtcctaactaatatatatatata 14333978  T

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Target: chr2 (Bit Score: 48; Significance: 1e-18; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 166 - 237
Target Start/End: Original strand, 14902266 - 14902337
Alignment:
Q  166 ggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||| ||||| |||||||||||| ||| ||||||| || |||||||||||||||||||||||||||||||||    
T  14902266 ggccgtttctaagattttggtggtctatggcgaacatacaatttgggtcctaactaataaatatatataaac 14902337  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 175 - 237
Target Start/End: Complemental strand, 24026789 - 24026727
Alignment:
Q  175 tgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaac 237  Q
    |||||||||||||| |||||||||||||| ||||| | || ||||||||||||||||||||||    
T  24026789 tgagattttggtggtctagggcgaacctacaatttagatcttaactaataaatatatataaac 24026727  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 163 - 234
Target Start/End: Complemental strand, 6584379 - 6584307
Alignment:
Q  163 cagggccttttctgagattttggtggccta-gggcgaacctataatttgggtcctaactaataaatatatata 234  Q
    ||||||| |||||||||||||||||| ||  ||||||||||| |||||||||||||| |||| ||||||||||    
T  6584379 cagggccgtttctgagattttggtggtctttgggcgaacctacaatttgggtcctaattaatgaatatatata 6584307  T

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Target: chr2; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 175 - 236
Target Start/End: Complemental strand, 35664618 - 35664557
Alignment:
Q  175 tgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaa 236  Q
    |||||||||||||| |||||||||||||| | ||||| ||||||||||||||  ||||||||    
T  35664618 tgagattttggtggtctagggcgaacctacattttggatcctaactaataaacctatataaa 35664557  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 218
Target Start/End: Original strand, 25642767 - 25642819
Alignment:
Q  166 ggccttttctgagattttggtggcctagggcgaacctataatttgggtcctaa 218  Q
    |||| |||||||| ||||||||| | |||| ||||||| ||||||||||||||    
T  25642767 ggccgtttctgagtttttggtggtcgagggtgaacctacaatttgggtcctaa 25642819  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 23127187 - 23127258
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggt-----cctaactaataaatatatataaac 237  Q
    |||||||||||||||||||| |||||||| ||| ||||||| |     ||||||||||||||||||||||||    
T  23127187 tttctgagattttggtggccaagggcgaatctacaatttggatcctaacctaactaataaatatatataaac 23127258  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 3375732 - 3375685
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaa 218  Q
    ||||| |||||||||||||||||||| ||| |||| ||||||||||||    
T  3375732 tttctaagattttggtggcctagggcaaacttatagtttgggtcctaa 3375685  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 171 - 218
Target Start/End: Complemental strand, 3400796 - 3400749
Alignment:
Q  171 tttctgagattttggtggcctagggcgaacctataatttgggtcctaa 218  Q
    ||||| |||||||||||||||||||| ||| |||| ||||||||||||    
T  3400796 tttctaagattttggtggcctagggcaaacttatagtttgggtcctaa 3400749  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 175 - 236
Target Start/End: Original strand, 34417 - 34478
Alignment:
Q  175 tgagattttggtggcctagggcgaacctataatttgggtcctaactaataaatatatataaa 236  Q
    |||||||||||||   || | ||||| ||||||||||||||||| ||||||||| |||||||    
T  34417 tgagattttggtgttttacgacgaacttataatttgggtcctaattaataaatacatataaa 34478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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