View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9113_low_13 (Length: 213)
Name: NF9113_low_13
Description: NF9113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9113_low_13 |
 | |
|
| [»] chr7 (7 HSPs) |
| |
|
| [»] chr1 (3 HSPs) |
| |
|
| [»] chr5 (7 HSPs) |
| |
|
| [»] chr3 (3 HSPs) |
| |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 189; Significance: 1e-103; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 189; E-Value: 1e-103
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 46706835 - 46707047
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||||||||||||||||| |||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46706835 |
accaatacacgggcacctttgttgttctcagccaaatcgttagccaaacgaagccccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
46706934 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46706935 |
tcacatatgggcgaagaccgaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
46707034 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
46707035 |
ctttggttgaccc |
46707047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 5289544 - 5289756
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
5289544 |
accaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatataccttt |
5289643 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
5289644 |
tcacatatggacgaagacccaagagttttgtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttga |
5289743 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5289744 |
ctttggttgaccc |
5289756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5310672 - 5310460
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||||||||||||| |||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
5310672 |
accaacacacgagcacctttgttgttctcagccaaatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatataccttt |
5310573 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
|||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
5310572 |
tcacatatggacgaaggcccaagagttttgtgagttgataatcagctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttga |
5310473 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5310472 |
ctttggttgaccc |
5310460 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5302771 - 5302559
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||| | |||||| |||||||||||||||||||| |||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
5302771 |
accaacacacgagcacctttgttgttctcagctagatctttggccaaacgaagcaccgtgccacctgcaaaacacccttgttggtacatcatgtaccttt |
5302672 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| ||||||||| | ||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
5302671 |
tcacatatgggcgaagacccaagagtttggtgagttgataatcagcttcgggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttga |
5302572 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5302571 |
ctttggttgaccc |
5302559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 5315386 - 5315174
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||| || |||| |
|
|
| T |
5315386 |
accaacacacgagcacctttgttgttctcagccaaatctttagccaaacggagcaccgtgccacctgcaaagcacccttgttggtacatcatgtatcttt |
5315287 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| ||||||| || ||||| |||||||| ||||| |||||||||||||| |||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
5315286 |
tcacatatgggcgaagacctaatagtttggtgagttgataatctgctccaggcatgtcaacaccacttgtggtgcaaacgattaagtgagtaatctttga |
5315187 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
5315186 |
ctttggttgaccc |
5315174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 5284583 - 5284375
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||| |||||||| ||||||||||| ||||| || |||||||| || ||||||||||||||||| ||||||| |
|
|
| T |
5284583 |
accaacacacgagcacctttgttgttctcagctaaatctttggccaaacgaagtaccgtaccacctgcaaaacacccttgttggtacatcatgtaccttt |
5284484 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||||| ||||| ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||| |
|
|
| T |
5284483 |
tcacatatgggcgaagacccaagagtttggtgagttgataatcggctccaggcatgtctacaccacttgtggtgcaaacgattaagtgagtaatctttga |
5284384 |
T |
|
| Q |
201 |
ctttggttg |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
5284383 |
ctttggttg |
5284375 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 121 - 165
Target Start/End: Original strand, 32530975 - 32531019
Alignment:
| Q |
121 |
aagagttttgtgagttggtaatcagctccaggcatgtctacacca |
165 |
Q |
| |
|
|||||||| |||||||||||||| || || ||||||||||||||| |
|
|
| T |
32530975 |
aagagtttagtgagttggtaatcggcacccggcatgtctacacca |
32531019 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 165; Significance: 2e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44128849 - 44128637
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44128849 |
accaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
44128750 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
44128749 |
tcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttga |
44128650 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44128649 |
ctttggttgaccc |
44128637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44133054 - 44132842
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44133054 |
accaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
44132955 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
44132954 |
tcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttga |
44132855 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44132854 |
ctttggttgaccc |
44132842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 165; E-Value: 2e-88
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 44141476 - 44141264
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| ||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44141476 |
accaacacacgagcacctttgttgttttcagctaaatctttagccaaacgaaggaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
44141377 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| ||||||||||| |
|
|
| T |
44141376 |
tcacatatgggcgaagacctaagagttttgtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacgatcaagtgagtaatctttga |
44141277 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||||||||||||| |
|
|
| T |
44141276 |
ctttggttgaccc |
44141264 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 133; Significance: 2e-69; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 133; E-Value: 2e-69
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1505252 - 1505040
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||||| || || ||||||||||||||||| || |||||||| || ||||| ||||||||||| ||||| | |
|
|
| T |
1505252 |
accaacacacgggcacctttgttgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaacatccttgctggtacatcatgtacctct |
1505153 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||||||| ||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||| ||||||||||| |
|
|
| T |
1505152 |
tcacatatgggcgaagacctaagagtttggtgagttggtaatcagctccaggcatgtctacaccacttgtggtgcaaacaattaagtgagtaatctttga |
1505053 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
|||||| |||||| |
|
|
| T |
1505052 |
ctttggctgaccc |
1505040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 123; E-Value: 2e-63
Query Start/End: Original strand, 7 - 213
Target Start/End: Complemental strand, 1492437 - 1492231
Alignment:
| Q |
7 |
acacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacat |
106 |
Q |
| |
|
||||| ||||||||||||| |||||||||||| |||||||||||||| |||||||| |||||||| |||||||| ||||||||||| || ||||| |||| |
|
|
| T |
1492437 |
acacgagcacctttgttgttctcagccaaatccttagccaaacgaagtaccgtgccacctgcaaaacaaccttgctggtacatcatgtatctttttacat |
1492338 |
T |
|
| Q |
107 |
atgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttgg |
206 |
Q |
| |
|
|||| ||||||| |||||||| |||||||| ||||| || ||||||||||||||||| || || ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
1492337 |
atggacgaagacctaagagtttagtgagttgataatcggccccaggcatgtctacaccgcttgtggtgcaaacgattaagtgagtaatctttgactttgg |
1492238 |
T |
|
| Q |
207 |
ttgaccc |
213 |
Q |
| |
|
||||||| |
|
|
| T |
1492237 |
ttgaccc |
1492231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1478274 - 1478066
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| |||||||| |||| ||||||||| || || ||||||||||||||||| || |||||||| || ||||||||||||||||||||||| | |
|
|
| T |
1478274 |
accaacacacgagcacctttattgttctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaaacatccttgttggtacatcatatacctct |
1478175 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
|||||||||| ||||||| |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||||| ||| ||||| ||||||||||| |
|
|
| T |
1478174 |
tcacatatggacgaagacctaagagtttggtgagttggtaatcagcgccaggcatgtctacaccacttgtggtgcaaaagatcaagtgtgtaatctttga |
1478075 |
T |
|
| Q |
201 |
ctttggttg |
209 |
Q |
| |
|
|||||||| |
|
|
| T |
1478074 |
ttttggttg |
1478066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 1 - 209
Target Start/End: Complemental strand, 1482468 - 1482260
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| |||||||| || | ||||||||| || || ||||||||||||||||| || ||||||||||| ||||||||||||||||| || || | |
|
|
| T |
1482468 |
accaacacacgagcacctttattattctcagccaagtccttggccaaacgaagcaccgtcccacctgcaaagcatccttgttggtacatcatgtatctct |
1482369 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
|||||||||| ||||||| ||||||||||||||||||||||| || |||||||||||||||||||| || || |||| |||||||| ||||||||||| |
|
|
| T |
1482368 |
tcacatatggacgaagacctaagagttttgtgagttggtaatcggcaccaggcatgtctacaccacttgtggtacaaaatattaagtgtgtaatctttga |
1482269 |
T |
|
| Q |
201 |
ctttggttg |
209 |
Q |
| |
|
|||||||| |
|
|
| T |
1482268 |
ttttggttg |
1482260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 1 - 213
Target Start/End: Complemental strand, 1499515 - 1499303
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||| | |||||| || || || ||||||||||| || || || |||||| | || ||| ||||||||||||| ||||||| |
|
|
| T |
1499515 |
accaacacacgagcacctttgttattctcagctaagtccttcgccaaacgaagtactgttccacctgcataacaccctagttggtacatcatgtaccttt |
1499416 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
|||||||||||| |||||| ||||||||||| ||||||||||| || ||||||||||||||||||||| ||||||| ||||| || ||||| ||||| |
|
|
| T |
1499415 |
tcacatatgggttaagacctaagagttttgttagttggtaatccgcaccaggcatgtctacaccactataggtgcaaaaaattaaatgtgtaatatttga |
1499316 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
1499315 |
cttcggttgaccc |
1499303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 17 - 209
Target Start/End: Complemental strand, 1486929 - 1486737
Alignment:
| Q |
17 |
ctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaag |
116 |
Q |
| |
|
|||| |||| ||||||||| || || ||| |||| || || ||||| ||||||||||| ||||||||||| |||||||||| |||||||| ||| ||| |
|
|
| T |
1486929 |
ctttattgttctcagccaagtccttggcctaacgtagaacagtgccccctgcaaagcatccttgttggtatatcatataccgtttcacatccgggcaaag |
1486830 |
T |
|
| Q |
117 |
acccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttggttg |
209 |
Q |
| |
|
||| ||||||||||||||||||||||| || ||||||||| ||| |||||| | ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
1486829 |
acctaagagttttgtgagttggtaatcggcaccaggcatgcctataccactcatggtgcaaaatattaagtgtgtaatctttgactttggttg |
1486737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 4e-37
Query Start/End: Original strand, 28 - 206
Target Start/End: Complemental strand, 1509372 - 1509194
Alignment:
| Q |
28 |
tcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacatatgggtgaagacccaagagtt |
127 |
Q |
| |
|
||||||||||| || |||||| ||||||| ||||| |||||||| || | ||||||||||||||| |||||||| ||||||||||||||||| || |||| |
|
|
| T |
1509372 |
tcagccaaatcctttgccaaatgaagcacagtgccacctgcaaaacacctttgttggtacatcatgtacctttttacatatgggtgaagacctaaaagtt |
1509273 |
T |
|
| Q |
128 |
ttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttgg |
206 |
Q |
| |
|
| || ||||| |||| |||||||| ||| || |||||||| || ||||||| |||||| || ||||||||||| ||||| |
|
|
| T |
1509272 |
tggtaagttgataatgagctccagacatatcaacaccacttgtggtgcaaaagattaaatgtgtaatctttgattttgg |
1509194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 109; Significance: 5e-55; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 109; E-Value: 5e-55
Query Start/End: Original strand, 1 - 209
Target Start/End: Original strand, 24163637 - 24163845
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| | ||||||||||| ||||||||| || || ||||| ||||| |||||||| |||||||| || ||||||||||||||||||||||||| |
|
|
| T |
24163637 |
accaacacacgagaacctttgttgttctcagccaagtccttggccaagcgaagtaccgtgccacctgcaaaacacccttgttggtacatcatataccttt |
24163736 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
| ||| ||||| ||||||| ||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||| |||||||| || |||||||| |
|
|
| T |
24163737 |
ttacacatgggcgaagacctaagagttttgtgagttggtaatcggcaccaggcatatctacaccacttatagtgcaaaatattaagtgtgtgatctttga |
24163836 |
T |
|
| Q |
201 |
ctttggttg |
209 |
Q |
| |
|
||||||||| |
|
|
| T |
24163837 |
ctttggttg |
24163845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 97; Significance: 7e-48; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 37863237 - 37863449
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||||||||| || |||||||||| |||||||||||||||||||||||||||||||| || || ||||| ||||||||||| ||||||||||| | | |
|
|
| T |
37863237 |
accaaaacacgagcgcctttgttgttttcagccaaatctttagccaaacgaagcaccgtcccaccagcaaaacaaccttgttgatacatcatataacgct |
37863336 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
||||||| ||| ||||||||||||| |||||||| || || ||||| |||||||| || |||||||| || ||||||| |||| || ||||||||||| |
|
|
| T |
37863337 |
tcacatacgggcgaagacccaagagctttgtgagctgatagtcagcaccaggcatatccacaccacttgtggtgcaaaaaattagatgagtaatctttga |
37863436 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
37863437 |
cttaggttgaccc |
37863449 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 37859211 - 37859423
Alignment:
| Q |
1 |
accaaaacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttt |
100 |
Q |
| |
|
||||| ||||| ||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||| |||||||||||||||||||| || | | |
|
|
| T |
37859211 |
accaacacacgagcacctttgttgttttcagccaagtctttagccaaacgaagcaccgtgccaccagcaaaacaaccttgttggtacatcatgtaacgct |
37859310 |
T |
|
| Q |
101 |
tcacatatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttga |
200 |
Q |
| |
|
|||||||||| |||| |||||||| ||||| || || || || || || |||||||| || ||||| || ||||||| ||| | |||||||||||| || |
|
|
| T |
37859311 |
tcacatatggacgaaggcccaagagctttgtcagctgatagtcggcaccgggcatgtccacgccactggtggtgcaaaagatgaggtgggtaatcttgga |
37859410 |
T |
|
| Q |
201 |
ctttggttgaccc |
213 |
Q |
| |
|
||| ||||||||| |
|
|
| T |
37859411 |
cttaggttgaccc |
37859423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 39030340 - 39030169
Alignment:
| Q |
7 |
acacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcacat |
106 |
Q |
| |
|
||||||||||||||||||| ||||||||||||||||||||| ||||| || | | || ||||| ||||||||||||||||||||||| | || |||| |
|
|
| T |
39030340 |
acacgggcacctttgttgttctcagccaaatctttagccaagcgaagagccatcgcaccagcaaaacaaccttgttggtacatcatataacgctttacat |
39030241 |
T |
|
| Q |
107 |
atgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaa |
178 |
Q |
| |
|
|||| ||| || ||||| |||||||| || || |||||||||||||| || |||||||| | |||||||| |
|
|
| T |
39030240 |
atggacaaaggcctaagagctttgtgagctgatagtcagctccaggcatatcgacaccacttgaagtgcaaa |
39030169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 6 - 213
Target Start/End: Complemental strand, 35251081 - 35250874
Alignment:
| Q |
6 |
aacacgggcacctttgttgtgctcagccaaatctttagccaaacgaagcaccgtgcctcctgcaaagcaaccttgttggtacatcatataccttttcaca |
105 |
Q |
| |
|
|||||| |||||||| |||| ||||||||||||||||||||||||||| ||| | || || || || || |||||||||||||||||||| | |||||| |
|
|
| T |
35251081 |
aacacgagcacctttattgttctcagccaaatctttagccaaacgaagaaccataccaccagcgaaacacccttgttggtacatcatataacgtttcacc |
35250982 |
T |
|
| Q |
106 |
tatgggtgaagacccaagagttttgtgagttggtaatcagctccaggcatgtctacaccactagtagtgcaaacgattaagtgggtaatctttgactttg |
205 |
Q |
| |
|
| || |||| || | | ||||||||| || |||||||| |||||||| || |||||||||||| |||||| || | ||| || ||||| ||||||| |
|
|
| T |
35250981 |
gacggacgaagtcctagcaattttgtgagctgataatcagcaccaggcatatccacaccactagtaatgcaaaatatgaggtgagtgatcttggactttg |
35250882 |
T |
|
| Q |
206 |
gttgaccc |
213 |
Q |
| |
|
|||||||| |
|
|
| T |
35250881 |
gttgaccc |
35250874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University