View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9113_low_3 (Length: 375)
Name: NF9113_low_3
Description: NF9113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9113_low_3 |
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Alignment Details
Target: chr7 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 1 - 363
Target Start/End: Complemental strand, 44034731 - 44034364
Alignment:
| Q |
1 |
ctgaatcagtgctctctctatttgttgtccatttggcattttatcaatctcaataacataaggctcagtaccaaaaccccttatcagttccctcactgtg |
100 |
Q |
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| T |
44034731 |
ctgaatcagtgctctctctatttgttgtccatttggcattttatcaatctcaataacataaggctcagtaccaaaaccccttatcagttccctcactgtg |
44034632 |
T |
|
| Q |
101 |
tgactcatgggacaagtgcttttgctgaacataactactggtttgttctctgttaatgatgccaacaaatccatatttctatgaaggtaggtagcta--t |
198 |
Q |
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| T |
44034631 |
tgactcatgggacaagtgcttttgctgaacataactactggtttgttctctgttaatgatgccaacaaatccat--ttctatgaaggtaggtaggtagct |
44034534 |
T |
|
| Q |
199 |
atatt-----gatgatttaagtgagtttgatttggtttgtagaaatttgagattagaggatgtgtatttataccagaatggattgtttacacatatagga |
293 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44034533 |
atattatgatgatgatttaagtgagtttgatttggtttgtagaaatttgagattagaggatgtgtatttataccagaatggattgtttacacatatagga |
44034434 |
T |
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| Q |
294 |
gaataaacatctgaaaaagaataaaccttaaagttgtgccataaatggattcccttaacctgcacaggtt |
363 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44034433 |
gaataaacatctgaaaaagaataaaccttaaagttgtgccataaatggattcccttaacctgcacaggtt |
44034364 |
T |
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