View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9113_low_8 (Length: 274)
Name: NF9113_low_8
Description: NF9113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9113_low_8 |
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| [»] chr2 (11 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 11)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 274
Target Start/End: Complemental strand, 5587065 - 5586809
Alignment:
| Q |
18 |
cttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataa |
117 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5587065 |
cttcctacctctgcaaaatctaattacaatccctatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataa |
5586966 |
T |
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| Q |
118 |
tcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactat |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5586965 |
tcagtaacattcttttaacttaaccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactat |
5586866 |
T |
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| Q |
218 |
aaagttattttgattgcagctcagcttcttggctttgagaacttcattccaccattt |
274 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
5586865 |
aaagttattttgattgtagctcagcttcttggctttgagaacttcattccaccattt |
5586809 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 163; E-Value: 4e-87
Query Start/End: Original strand, 26 - 274
Target Start/End: Complemental strand, 5593290 - 5593045
Alignment:
| Q |
26 |
ctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaac |
125 |
Q |
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|||| ||| ||| |||||||||||||| || |||||||| |||||||||||||| |||||||||||||||||||||||| ||||||||||||| |||||| |
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| T |
5593290 |
ctctccaagatcaaattacaatccttacgggatcgacttcccgatgggcccaaccggaagatttaccaacggtcgaactacaattgacataataagtaac |
5593191 |
T |
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| Q |
126 |
attcttttaacttaaccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttat |
225 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || || | |
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| T |
5593190 |
attcttttaacttatccatattatgaaacatgaagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagcttaaactatgaacttct |
5593091 |
T |
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| Q |
226 |
tttgattgcagctcagcttcttggctttgagaacttcattccaccattt |
274 |
Q |
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| T |
5593090 |
t---attgcagctcagttacttggttttgagaaattcattccaccattt |
5593045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 18 - 138
Target Start/End: Complemental strand, 5573534 - 5573414
Alignment:
| Q |
18 |
cttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataa |
117 |
Q |
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||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||| |||||||||||||||||| ||||| |||||||||||| |
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| T |
5573534 |
cttcctacctctgcaaaatctaattacaaaccttatggaattgactttccgatgggtccaaccggaagatttaccaacggtagaactgcaattgacataa |
5573435 |
T |
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| Q |
118 |
tcagtaacattcttttaactt |
138 |
Q |
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| ||||||||||||| ||||| |
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| T |
5573434 |
taagtaacattctttcaactt |
5573414 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 18 - 129
Target Start/End: Complemental strand, 5576696 - 5576585
Alignment:
| Q |
18 |
cttcctacctctgcaaaatctaattacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataa |
117 |
Q |
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||||| ||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
5576696 |
cttcccacctctgcaaaatctaattacaaaccttatggaattgacttcccgatgggcccaaccggaagatttaccaacggtcgaacttcaattgacataa |
5576597 |
T |
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| Q |
118 |
tcagtaacattc |
129 |
Q |
| |
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| |||| ||||| |
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| T |
5576596 |
taagtagcattc |
5576585 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 158 - 270
Target Start/End: Complemental strand, 5576504 - 5576392
Alignment:
| Q |
158 |
aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagttattttgattgcagctcagcttcttggctttgaga |
257 |
Q |
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||||||||||| || ||||||||||||||||| |||| |||||||||||||||||||| ||||||| |||| |||||||||||||||||||| ||||||| |
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| T |
5576504 |
aagtgtttttcattattcttttctcttgttacattaatcttttgattcagctcaaactgtaaagttctttttattgcagctcagcttcttggttttgaga |
5576405 |
T |
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| Q |
258 |
acttcattccacc |
270 |
Q |
| |
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| ||||||||||| |
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| T |
5576404 |
aattcattccacc |
5576392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 158 - 274
Target Start/End: Complemental strand, 5582673 - 5582558
Alignment:
| Q |
158 |
aagtgtttttctttgttcttttctcttgttaccttaaacttttgattcagctcaaactataaagtta-ttttgattgcagctcagcttcttggctttgag |
256 |
Q |
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||||||||||| ||||||||||||||| ||| |||| ||||||||||||||||||||||||||||| |||| |||||||||||||||||| | |||||| |
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| T |
5582673 |
aagtgtttttcattgttcttttctcttcttat-ttaagcttttgattcagctcaaactataaagttattttttattgcagctcagcttctt-gttttgag |
5582576 |
T |
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| Q |
257 |
aacttcattccaccattt |
274 |
Q |
| |
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|||||||||| ||||||| |
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| T |
5582575 |
aacttcattctaccattt |
5582558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 40 - 132
Target Start/End: Original strand, 12064683 - 12064775
Alignment:
| Q |
40 |
attacaatccttatggaatcgactttccgatgggcccaactggaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttt |
132 |
Q |
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||||||| ||||||||||| |||| ||||| || |||| |||||||||||||| ||||||||| ||||||||||||| ||||||||||||| |
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| T |
12064683 |
attacaaaccttatggaattgactccccgatcggaacaaccggaagatttaccaatggtcgaactacaattgacataataagtaacattcttt |
12064775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 82 - 149
Target Start/End: Original strand, 12059314 - 12059381
Alignment:
| Q |
82 |
gaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttttaacttaaccatattat |
149 |
Q |
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||||||||||||| ||||||||| ||||||||||||| ||||||||||||| || ||||| ||||||| |
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| T |
12059314 |
gaagatttaccaatggtcgaactgcaattgacataataagtaacattctttcaatttaactatattat |
12059381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 225 - 274
Target Start/End: Complemental strand, 5573357 - 5573308
Alignment:
| Q |
225 |
ttttgattgcagctcagcttcttggctttgagaacttcattccaccattt |
274 |
Q |
| |
|
|||||||||||||||| |||||||| |||||||| ||||||||||||||| |
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| T |
5573357 |
ttttgattgcagctcaacttcttggatttgagaatttcattccaccattt |
5573308 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 132
Target Start/End: Original strand, 12051893 - 12051943
Alignment:
| Q |
82 |
gaagatttaccaacggtcgaacttcaattgacataatcagtaacattcttt |
132 |
Q |
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| T |
12051893 |
gaagatttaccaacggtcgaactgcaattaacataataagtaacgttcttt |
12051943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 92 - 152
Target Start/End: Complemental strand, 5582793 - 5582732
Alignment:
| Q |
92 |
caacggtcgaacttcaattgacataatcagtaac-attcttttaacttaaccatattatgaa |
152 |
Q |
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||||||||||||| ||||||||||||| |||||| ||||||| || ||| | |||||||||| |
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| T |
5582793 |
caacggtcgaactgcaattgacataataagtaacaattctttcaatttatctatattatgaa |
5582732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 81 - 124
Target Start/End: Complemental strand, 36357926 - 36357883
Alignment:
| Q |
81 |
ggaagatttaccaacggtcgaacttcaattgacataatcagtaa |
124 |
Q |
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|||||||||||||| || || ||||||||||||||||||||||| |
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| T |
36357926 |
ggaagatttaccaatggccgtacttcaattgacataatcagtaa |
36357883 |
T |
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