View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9113_low_9 (Length: 273)
Name: NF9113_low_9
Description: NF9113
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9113_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 241; Significance: 1e-133; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 8 - 264
Target Start/End: Original strand, 55363258 - 55363514
Alignment:
| Q |
8 |
tccatcaacacatgaagaaataataaactttgcattccaattcaaattaaattatcattgattgaaagacgattatgcaataatctccaaacaaacactg |
107 |
Q |
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| T |
55363258 |
tccatcaacacatgaagagataataaactttgcattccaattcaaattaaattatctttgattgaaagacgattatgcaataatctccaaacaaacactg |
55363357 |
T |
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| Q |
108 |
atatcttcaatagaacaaacttattccaagtgactttaaacagaggggaatcaacaattgcttcaaaatttgatatcaagttataaacttctttaaatga |
207 |
Q |
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| T |
55363358 |
atatcttcaatagaacaaacttatttcaagtgactttaaacagaggggaatcaacaattgcttcaaaatttgatatcaagttataaacttctttaaatga |
55363457 |
T |
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| Q |
208 |
aaacatattgtcgtcgttgatatctcaaattcagatataggatttgaactccaaact |
264 |
Q |
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| T |
55363458 |
aaacatattgtcgtcgttgatatctcaaattaagatataggatttgaactccaaact |
55363514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 1 - 112
Target Start/End: Original strand, 55361517 - 55361628
Alignment:
| Q |
1 |
agttatatccatcaacacatgaagaaataataaactttgcattccaattcaaattaaattatcattgattgaaagacgattatgcaataatctccaaaca |
100 |
Q |
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| T |
55361517 |
agttatatccatctacacatgaatagataataaactttgcattccaattcaaattaaattatctttgattgaaagacagttatataataatctccaaaca |
55361616 |
T |
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| Q |
101 |
aacactgatatc |
112 |
Q |
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| T |
55361617 |
aacaatgatatc |
55361628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 52 - 203
Target Start/End: Complemental strand, 7609513 - 7609362
Alignment:
| Q |
52 |
aattaaattatcattgattgaaagacgattatgcaataatctccaaacaaacactgatatcttcaatagaacaaacttattccaagtgactttaaacaga |
151 |
Q |
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| T |
7609513 |
aattaaattatctttagttggaagacgattatacagtaattttcaagcaaacattgatgtcttcattggaatcaacaaattccaagtgaccttataccga |
7609414 |
T |
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| Q |
152 |
ggggaatcaacaattgcttcaaaatttgatatcaagttataaacttctttaa |
203 |
Q |
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| T |
7609413 |
gaggaatcaacaatttctttaaaatttgatatcaagtcatacacttctttaa |
7609362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 52 - 216
Target Start/End: Complemental strand, 21462898 - 21462732
Alignment:
| Q |
52 |
aattaaattatcattgattgaaagacgattatgcaataatctccaaacaaacactgatatcttcaatagaacaaacttattccaagtgactttaaacaga |
151 |
Q |
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|||||||||||| || |||| || ||| |||| |||||||||| || |||||| ||||||||| || |||| |||||||| |||||||||||| ||| | |
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| T |
21462898 |
aattaaattatctttaattggaatacggttatccaataatctctaagcaaacaatgatatctttgatggaaccaacttatttcaagtgactttatacaaa |
21462799 |
T |
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| Q |
152 |
gggga--atcaacaattgcttcaaaatttgatatcaagttataaacttctttaaatgaaaacatatt |
216 |
Q |
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| | | |||||| | |||||||||| |||||||||| |||| ||||||||| | ||||||||| |
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| T |
21462798 |
aagaatcaacaacaacttcttcaaaattcgatatcaagtcataagcttctttaactagaaacatatt |
21462732 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 51; Significance: 3e-20; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 80 - 202
Target Start/End: Original strand, 12308034 - 12308156
Alignment:
| Q |
80 |
ttatgcaataatctccaaacaaacactgatatcttcaatagaacaaacttattccaagtgactttaaacagaggggaatcaacaattgcttcaaaatttg |
179 |
Q |
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|||||||| |||||| |||||||| ||||||||||||| ||| || |||||||||||||||||| ||| ||| |||| ||||| | |||||||||| |
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| T |
12308034 |
ttatgcaacaatctctgaacaaacaatgatatcttcaatggaagcaaattattccaagtgactttatacaaaggagaataaacaacttcttcaaaattaa |
12308133 |
T |
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| Q |
180 |
atatcaagttataaacttcttta |
202 |
Q |
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| T |
12308134 |
aaatcaagttataatcttcttta |
12308156 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 51 - 117
Target Start/End: Complemental strand, 44633253 - 44633187
Alignment:
| Q |
51 |
aaattaaattatcattgattgaaagacgattatgcaataatctccaaacaaacactgatatcttcaa |
117 |
Q |
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||||||||||||| || ||| |||||| |||||||||||||||||| |||||| |||||||||||| |
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| T |
44633253 |
aaattaaattatctttagttggaagacggttatgcaataatctccaagcaaacaatgatatcttcaa |
44633187 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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