View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9114_low_5 (Length: 425)
Name: NF9114_low_5
Description: NF9114
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9114_low_5 |
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Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 32 - 369
Target Start/End: Complemental strand, 9037543 - 9037203
Alignment:
| Q |
32 |
aatcgagatggaggttttttcttgacaaggtttggggatggtgttggtgtaaggtctgaaatactaaaaccaatgatgaacatgaacagaagagtagcta |
131 |
Q |
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| T |
9037543 |
aatcgagatggaggttttttcttgacaaggtttggggatggtgttggtgtaaggtctgaaatactaaaaccaatgatgaacatgaacagaagattagcta |
9037444 |
T |
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| Q |
132 |
atgaaaacctaattgccatcatnnnnnnnnnnnnnnnat----atagagttgtatagaattatgatgatatgattagaaaaccatgttgtgcctttttat |
227 |
Q |
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| T |
9037443 |
atgaaaacctaattgccatcattctctctctctctctctctctatagaattgtatagaattatgatgatatgattagaaaaccatgttgtgcctttttat |
9037344 |
T |
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| Q |
228 |
agtggcattggagatgccatattgtgcatttgagatgcttacatattgtgcatttaaatgttgtctactgatttgaagtaagagaattaacaaacgtaac |
327 |
Q |
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| T |
9037343 |
agtg-cattggagatgccatattgtgcatttgagatgcttacatattgtgcatttaaatgtcgtctactgatttgaagtaagagaattaacaaaggtaac |
9037245 |
T |
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| Q |
328 |
ttagccaagagagcataccaatttcagaacaacgtattaatt |
369 |
Q |
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||||||||| | |||||||||||||||||||| |||||||| |
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| T |
9037244 |
ttagccaagtaaacataccaatttcagaacaacatattaatt |
9037203 |
T |
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