View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_high_13 (Length: 265)
Name: NF9115_1D_high_13
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_high_13 |
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Alignment Details
Target: chr1 (Bit Score: 194; Significance: 1e-105; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 50 - 243
Target Start/End: Original strand, 37055148 - 37055341
Alignment:
| Q |
50 |
tttcaactataaaaccttgtttctcttcattctcatctaaacctgagattttctgaacctgcttcttttcattttcttgttctttcatgtaatagttatc |
149 |
Q |
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| T |
37055148 |
tttcaactataaaaccttgtttctcttcattctcatctaaacctgagattttctgaacctgcttcttttcattttcttgttctttcatgtaatagttatc |
37055247 |
T |
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| Q |
150 |
ttgtaaagtatgaacatggaagcttccagctgcattgattaaagcaccaacactcaaaatgtgagtcctttgtgatgatgataaaggaaccaag |
243 |
Q |
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| T |
37055248 |
ttgtaaagtatgaacatggaagcttccagctgcattgattaaagcaccaacactcaaaatgtgagtcctttgtgatgatgataaaggaaccaag |
37055341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 12 - 59
Target Start/End: Original strand, 15965076 - 15965123
Alignment:
| Q |
12 |
tgtttatgatgtacgatatatgtgttttcttctaggtgtttcaactat |
59 |
Q |
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| T |
15965076 |
tgtttatgatgtacgatatatgtgttttcttctaggtgtttcgactat |
15965123 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 8 - 48
Target Start/End: Original strand, 40796754 - 40796794
Alignment:
| Q |
8 |
ttggtgtttatgatgtacgatatatgtgttttcttctaggt |
48 |
Q |
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| T |
40796754 |
ttggtgtttatgatgtacgatgtatgtattttcttttaggt |
40796794 |
T |
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