View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_high_9 (Length: 338)
Name: NF9115_1D_high_9
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_high_9 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 23 - 327
Target Start/End: Original strand, 24929796 - 24930099
Alignment:
| Q |
23 |
aaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagctacgatgaaaagatgaagaaaccattaatc |
122 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
24929796 |
aaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaatccacttcagaaagctatgatgaaaagatgaagaaaccattaatc |
24929895 |
T |
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| Q |
123 |
attgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgata |
222 |
Q |
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| T |
24929896 |
attgatgacgagccagaagaattcaccactggtatgt-aattggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgata |
24929994 |
T |
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| Q |
223 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtcc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
24929995 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtagattctcaactcaacaataatgtggttaaggtgacttgtcc |
24930094 |
T |
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| Q |
323 |
aactc |
327 |
Q |
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||||| |
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| T |
24930095 |
aactc |
24930099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 164 - 327
Target Start/End: Complemental strand, 24976941 - 24976778
Alignment:
| Q |
164 |
tggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgatatgttcaaaagaaagagttgcaaccatctcttttgtgttgat |
263 |
Q |
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| T |
24976941 |
tggtgaatcctcacgaagcttatgtggtatatgctttgatttgaaaacagattcagatatgttcaaaagaaagagttgcaaccacctcttttgtgttgaa |
24976842 |
T |
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| Q |
264 |
tgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtccaactc |
327 |
Q |
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| T |
24976841 |
tgtatttccaaatatgtggtttctcaaattaacaacaatgtggttaaggtgacttgtccaactc |
24976778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 23 - 327
Target Start/End: Complemental strand, 2137 - 1833
Alignment:
| Q |
23 |
aaaagaaccgtcagaacatgattctgatacaaagcagaaaaaactaaagagaaaattcacttcagaaagctacgatgaaaagatgaagaaaccattaatc |
122 |
Q |
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||||||||||||||||||||| |||||| |||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2137 |
aaaagaaccgtcagaacatgactctgatgcaaagcagaagaaactaaagagaaaatccacttcagaaagctacgatgaaaagatgaagaaaccattaatc |
2038 |
T |
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| Q |
123 |
attgatgacgagccagaagaattcaccactggtatgttaattggtgagtcctcaagaagctcatgtggtatatgctttgatttgaaaactgattttgata |
222 |
Q |
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|||||||| || |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
2037 |
attgatgaggaaccagaagaattcaccactaagatgttaattggtgaatcctcaagaagctcatgtggtatatgctttgatttgaaaactgatttggata |
1938 |
T |
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| Q |
223 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtcc |
322 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1937 |
tgttcaaaagaaagagttgcaaccatctcttttgtgttgattgtatttccaaatatgtggattctcaactcaacaataatgtggttaaggtgacttgtcc |
1838 |
T |
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| Q |
323 |
aactc |
327 |
Q |
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||||| |
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| T |
1837 |
aactc |
1833 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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