View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_1 (Length: 732)
Name: NF9115_1D_low_1
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 618; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 618; E-Value: 0
Query Start/End: Original strand, 1 - 678
Target Start/End: Complemental strand, 23333272 - 23332595
Alignment:
| Q |
1 |
gcagcattaattacctcaaaaaggtttgcatggaaaatagatgtttgttcttctctattttgctggccaggtgttgttttaaatattaggcaatggtttt |
100 |
Q |
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| T |
23333272 |
gcagcattaattaactcaaaaaggtttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaatattaggcgatggtttt |
23333173 |
T |
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| Q |
101 |
aatttggctacttttggaatgtaatgctacgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgt |
200 |
Q |
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| T |
23333172 |
aatttggctacttttggaaagtaatgctatgaagacttatttgtttcttggtgcattttctgaaagttatacaatacttacgctgatatttcttggttgt |
23333073 |
T |
|
| Q |
201 |
caagttaggatcaagactgtcaattatcattcatgctatgtagttagtcggttcattagtgggcattgcactgttttggtatgttgattggaactaaccg |
300 |
Q |
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| T |
23333072 |
caagttaggatcaagactgtcaattatcattcatgctatgtagttagtcggttcatttgtgggcattgcactgttttggtatgttgattggaactaaccg |
23332973 |
T |
|
| Q |
301 |
tgtcatgtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttcgccaaggaatatggtgtgcatgttgatgattatgtcatgttgcgtga |
400 |
Q |
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| T |
23332972 |
tgtcatgtgtttgatgtgttggtcagccgaagacaaggttgccatcgtgtttcgccaaggaatatggtttgcatgttgatgattatgtcatgttgcgtga |
23332873 |
T |
|
| Q |
401 |
tccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggtctatctgcgggatggttgggctgagctgaagggtttctataaggtagat |
500 |
Q |
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| T |
23332872 |
tccaaacagaaacatgttcaaggtcaaggtccacgtgaaaaatggcaaggtttatctgcgggatggttgggctgagctgaagggtttctataaggtagat |
23332773 |
T |
|
| Q |
501 |
cgtggtgcgtgggtcaccctgacttatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttc |
600 |
Q |
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| T |
23332772 |
cgtggtgcgtgggtcaccctgacgtatgtacagccgaatcttctagatatgactatcgcagagagatcaggagtcgaaatcaactatcctaacaaatttc |
23332673 |
T |
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| Q |
601 |
ttcctcccatgtcgaaaatgattgtccaacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccacatat |
678 |
Q |
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| T |
23332672 |
ttcctcccatgtcgaaaatgattgtcccacgtgagggtggatcggtcatgcgcttctatcgctcattcgtccatatat |
23332595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 357 - 451
Target Start/End: Original strand, 10955074 - 10955166
Alignment:
| Q |
357 |
aaggaatatggtgtgcatgttgatgattatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
451 |
Q |
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| T |
10955074 |
aaggaatatggtttgcacgttgatgactatgtcat--tgcgtgatcctaacaagaacatgttcgaggttaaggtccacaagaagaagggcaaggt |
10955166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 715
Target Start/End: Complemental strand, 23322373 - 23322331
Alignment:
| Q |
673 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
715 |
Q |
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| T |
23322373 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23322331 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 673 - 715
Target Start/End: Complemental strand, 23332540 - 23332498
Alignment:
| Q |
673 |
acatatgcgtttggattttacaacgattgtgtttggtgatgtc |
715 |
Q |
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| T |
23332540 |
acatatgcgtttggagtttacaacgtttgtgtttggtgatgtc |
23332498 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 384 - 451
Target Start/End: Complemental strand, 2027759 - 2027692
Alignment:
| Q |
384 |
tatgtcatgttgcgtgatccaaacagaaacatgttcgaggtcaaggtccacgtgaaaaatggcaaggt |
451 |
Q |
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| T |
2027759 |
tatgtcattttgcgtgatccaaacaagaacatgtttgaggttaaagttcacaagaaaaatggcaaggt |
2027692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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