View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_12 (Length: 288)
Name: NF9115_1D_low_12
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_12 |
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Alignment Details
Target: chr3 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 35 - 282
Target Start/End: Original strand, 2520620 - 2520866
Alignment:
| Q |
35 |
gaacctgtgaagattaagcgttgggcaattgtaaacttttcgtcacagtgtgatccgaaacatttgtgcagtatgattaaaaaatgttctgaaatgaaag |
134 |
Q |
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| T |
2520620 |
gaacctgtgaagattaagcgttgggcaattgtaaacttttcgtcacagtgtgatacgaaacatttgtgcagtatgattaaaaaatgttctgaaatgaaag |
2520719 |
T |
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| Q |
135 |
ggatggtaagannnnnnnagtagcaaatacatttttgtgatgtctactccacttgtgtttcaaattctggtttcttttgtagctcatagatcctccgttc |
234 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2520720 |
ggatggtaag-tttttttagtagcaaatacatttttgtgatgtctactccacttgtgtttcaaattctggtttcttttgtagctcatagatcctccgttc |
2520818 |
T |
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| Q |
235 |
gacatatttgaagaggatattcgccataggaatgagtcgccatttgcg |
282 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2520819 |
gacatatttgaagaggatattcgccataggaatgagtcgccatttgcg |
2520866 |
T |
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