View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF9115_1D_low_25 (Length: 219)
Name: NF9115_1D_low_25
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_25 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 202; Significance: 1e-110; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 212
Target Start/End: Complemental strand, 52946974 - 52946769
Alignment:
| Q |
7 |
atatgggtgcttgttattcttgcaacacatcctctatattaaaaaataatatcagagtcattcatctgaatggttttgtagaagattttgatcaaccaat |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52946974 |
atatgggtgcttgttattcttgcaacacatcctctatattaaaaaataatatcagagtcattcatctgaatggttttgtagaagattttgatcaaccaat |
52946875 |
T |
|
| Q |
107 |
ttcagcaagccaagttattggaaatccaccaaactactttgtctgtacctcaattcagcttctttcttcatcctacaatccattgaaaggagatagtcaa |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52946874 |
ttcagcaagccaagttattggaaatccaccaaactactttgtctgtacctcaattcagcttctttcttcatcctacaatccattgaaaggagatagtcaa |
52946775 |
T |
|
| Q |
207 |
caccaa |
212 |
Q |
| |
|
| |||| |
|
|
| T |
52946774 |
ctccaa |
52946769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University