View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_29 (Length: 212)
Name: NF9115_1D_low_29
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_29 |
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Alignment Details
Target: chr8 (Bit Score: 153; Significance: 3e-81; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 7 - 167
Target Start/End: Complemental strand, 18647066 - 18646906
Alignment:
| Q |
7 |
cggagaaagtgcgagagttgaaccttcatcatcatggaaactgaatgtgaaggagtttaagttaccacatcatcaccatgatcatcataaccatcaacca |
106 |
Q |
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| T |
18647066 |
cggagaaagtgtgagagttgaaccttcatcatcatggaaactgaatgtgaaggagtttaagttaccacatcatcaccatgatcatcataaccgtcaacca |
18646967 |
T |
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| Q |
107 |
cgttccttcactttcagtggccttgttcgcaaacccaataacagtaagtatagtaatccct |
167 |
Q |
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| T |
18646966 |
cgttccttcactttcagtggccttgttcgcaaacccaataacagtaagtatagtaatccct |
18646906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 8e-57
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 18650310 - 18650160
Alignment:
| Q |
8 |
ggagaaagtgcgagagttgaaccttcatcatcatggaaactgaatgtgaaggagtttaagttaccacatcatcaccatgatcatcataaccatcaaccac |
107 |
Q |
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|||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
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| T |
18650310 |
ggagaaagtgtgatagttgaaccttcatcatcatggaaactgaatgtgaaggagtttaacttaccacat---------gatcatcataaccgtcaaccac |
18650220 |
T |
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| Q |
108 |
gttccttcactttcagtggccttgttcgcaaacccaataacagtaagtatagtaatccct |
167 |
Q |
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| T |
18650219 |
gttccttcactttcagtggccttgttcgcaaacccaataacagtaagtatagtaatccct |
18650160 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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