View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_33 (Length: 205)
Name: NF9115_1D_low_33
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_33 |
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Alignment Details
Target: chr2 (Bit Score: 135; Significance: 2e-70; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 157
Target Start/End: Complemental strand, 6528499 - 6528365
Alignment:
| Q |
23 |
gacgccaccacctacactcgtctccctctcagggaagacttttcttccactttctcaccttcctcctctgaaatcaaactctccgaatcaacaccaattc |
122 |
Q |
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| T |
6528499 |
gacgccaccacctacactcgtctccctctcagggaagacttttcttccactttctcaccttcctcctctgaaatcaaactctccgaatcaacaccaattc |
6528400 |
T |
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| Q |
123 |
accaattgctccacaaactcgataacgatgatgat |
157 |
Q |
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| T |
6528399 |
accaattgctccacaaactcgataacgatgatgat |
6528365 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 8e-17; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 25 - 129
Target Start/End: Complemental strand, 2974211 - 2974107
Alignment:
| Q |
25 |
cgccaccacctacactcgtctccctctcagggaagacttttcttccactttctcaccttcctcctctgaaatcaaactctccgaatcaacaccaattcac |
124 |
Q |
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| T |
2974211 |
cgccatcacctacactcgtcttcccgacagggaagatttatcatccccattctcaccttcctcctccaaaatcaaactctctgaatcaactcaaattcac |
2974112 |
T |
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| Q |
125 |
caatt |
129 |
Q |
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||||| |
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| T |
2974111 |
caatt |
2974107 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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