View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_34 (Length: 205)
Name: NF9115_1D_low_34
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_34 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 10152983 - 10152792
Alignment:
| Q |
7 |
ctgagatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaag |
106 |
Q |
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| T |
10152983 |
ctgatatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaag |
10152884 |
T |
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| Q |
107 |
tgctgttaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10152883 |
tgctgtcaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
10152792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 7 - 198
Target Start/End: Complemental strand, 10141362 - 10141171
Alignment:
| Q |
7 |
ctgagatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaag |
106 |
Q |
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| T |
10141362 |
ctgagatgaaaatggtcattgaagctcttcatgaccttcctatagatataaagaaaaacaacaaagatgccattcctggaagtggttaccttgcaccaag |
10141263 |
T |
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| Q |
107 |
tgctgttaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10141262 |
tgcttttaaccctctcttacaatctttcggcctctatgatatgggttcttcacaagccatgcatgatttctgctctcaactgaatgctacac |
10141171 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 8 - 198
Target Start/End: Complemental strand, 10089725 - 10089535
Alignment:
| Q |
8 |
tgagatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaagt |
107 |
Q |
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| T |
10089725 |
tgagatgaaaatggttgttgtagctcttcacgaccttcctatggatatcaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaagt |
10089626 |
T |
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| Q |
108 |
gctgttaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10089625 |
gtttttaaccctctcatagaatctgtcggcctctatgatatgggttcttcgcaagctatacaagatttctgctctcaattgaatgctacac |
10089535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 70; E-Value: 9e-32
Query Start/End: Original strand, 21 - 198
Target Start/End: Complemental strand, 10146360 - 10146183
Alignment:
| Q |
21 |
gttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaagtgctgttaatcctc |
120 |
Q |
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| T |
10146360 |
gttgttgaagctcttcatgaccttcctatggatatcaagaaaaacaacaaagatgtcatttctggaaggggttactttgcaccaagtgctttaaacccac |
10146261 |
T |
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| Q |
121 |
tctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
10146260 |
tattagaatctttcggcctctatgacatggatgcttcataagctatgcatgatttctgctctcaactgaatgtcacac |
10146183 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 8 - 198
Target Start/End: Original strand, 11301017 - 11301207
Alignment:
| Q |
8 |
tgagatgaagatcgttgttcaagctcttcttgatcttcctatggatatcaagaaaaacaacaaagatgtcattgctggtagtggttacatggcaccaagt |
107 |
Q |
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| T |
11301017 |
tgagatgaaaatagttgttatagctcttcatgaccttcctatggataggaagaaaaacaataaagatgtcattcctggaagtggttactttggaccaact |
11301116 |
T |
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| Q |
108 |
gctgttaatcctctctatgaagctttaggcctctatgatttaggttcttcacaagctgtgcatgaattctgctctcaattgaatgccacac |
198 |
Q |
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| T |
11301117 |
gtttttaaccctgtcatagaatctcttggcctctatgatatgggttcttcacaagctatacaatatttctgctctcaattgaatgctacac |
11301207 |
T |
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