View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF9115_1D_low_36 (Length: 202)

Name: NF9115_1D_low_36
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF9115_1D_low_36
NF9115_1D_low_36
[»] chr6 (2 HSPs)
chr6 (2-196)||(7519467-7519661)
chr6 (2-196)||(7528838-7529032)
[»] chr4 (1 HSPs)
chr4 (2-196)||(4231810-4232004)
[»] chr1 (12 HSPs)
chr1 (2-196)||(43066423-43066617)
chr1 (2-196)||(3301073-3301267)
chr1 (2-196)||(43045337-43045531)
chr1 (2-196)||(43045790-43045984)
chr1 (2-196)||(43084218-43084412)
chr1 (2-193)||(45983463-45983654)
chr1 (2-196)||(45993240-45993434)
chr1 (21-196)||(7890792-7890967)
chr1 (2-197)||(38137607-38137802)
chr1 (30-196)||(40034448-40034612)
chr1 (28-177)||(7888546-7888695)
chr1 (28-197)||(51291985-51292153)
[»] chr2 (4 HSPs)
chr2 (2-196)||(34691170-34691362)
chr2 (2-196)||(34713582-34713774)
chr2 (52-196)||(16232567-16232711)
chr2 (127-164)||(33861304-33861341)
[»] chr8 (3 HSPs)
chr8 (2-196)||(4620033-4620227)
chr8 (28-196)||(1846761-1846929)
chr8 (52-179)||(4787275-4787402)
[»] chr5 (1 HSPs)
chr5 (2-176)||(16349482-16349656)


Alignment Details
Target: chr6 (Bit Score: 183; Significance: 3e-99; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 183; E-Value: 3e-99
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 7519661 - 7519467
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7519661 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 7519562  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  7519561 ccacaaagcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaaagacctcttgttcatctcag 7519467  T

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Target: chr6; HSP #2
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 7529032 - 7528838
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  7529032 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccgggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 7528933  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    |||||| |||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| | ||||||||||||||    
T  7528932 ccacaaggcaatatcgatggtaattcctctttcacgctcagccttaagtttgtcaagaacccatgcatacttgaatgaacgcttgttcatctcag 7528838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 103; Significance: 2e-51; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 4231810 - 4232004
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| || ||||||||||||||||| |||||||| |  |||||||| ||||||||||| |||||||||||||| ||||||||||| ||    
T  4231810 cacaatcagcttgggatgtaccagtaatcatgttcttaatgaaatccctgtgtccaggggcatcaatgacagtgcagtagtacttagtggtctcaaactt 4231909  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    |||||  ||||| ||||| || || |||||||||||||||||||| ||||||||||||||||| || ||||| ||||| | ||||||||||||||    
T  4231910 ccacagagcaatgtcaattgtgatacctctttcacgctcagccttgagcttgtcaagaacccaagcatacttaaatgaacgcttgttcatctcag 4232004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 43066617 - 43066423
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43066617 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43066518  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||||||||| || ||||||||||| | ||||||||||||||    
T  43066517 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaagaacccaggcatacttgaatgaacgcttgttcatctcag 43066423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 3301073 - 3301267
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| |||||||||||||||||||| |||||||| |  ||||| || ||||||||||| |||||||||||||| || |||||||| ||    
T  3301073 cacaatcagcttgggatgttccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagtagtacttagtagtctcaaactt 3301172  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    |||||  ||||| ||||| || || ||||||||||  |||||||| |||||||| || ||||| || ||||||||||| | ||||||||||||||    
T  3301173 ccacagagcaatgtcaattgtgatacctctttcacattcagccttgagcttgtcgagcacccaagcatacttgaatgaacgcttgttcatctcag 3301267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 43045337 - 43045531
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43045337 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43045436  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| | ||||||||||||||    
T  43045437 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcag 43045531  T

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Target: chr1; HSP #4
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 43045790 - 43045984
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43045790 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43045889  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| | ||||||||||||||    
T  43045890 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcag 43045984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 43084218 - 43084412
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||| ||||| ||||||||||||||||| |||||||| ||    
T  43084218 cacaatcagcttgggatgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcgatgacagtgcagtagtacttggttgtctcaaactt 43084317  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    ||| |  ||||| |||||||| || ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| | ||||||||||||||    
T  43084318 ccagagagcaatgtcaatggtgatacctctttcacgttcagccttgagcttgtcaaggacccaggcatacttgaatgaacgcttgttcatctcag 43084412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 68; E-Value: 1e-30
Query Start/End: Original strand, 2 - 193
Target Start/End: Complemental strand, 45983654 - 45983463
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||| ||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||||||||| ||||||| ||||||| | |||||||| ||    
T  45983654 cacagtcagcttgggacgttccggtgatcatgttcttaatgaaatccctgtgtccgggggcatcaatgacagtgcagttgtacttgtttgtctcaaactt 45983555  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatct 193  Q
    | |||  | ||| ||||| ||||  ||||||||||| |||||||| ||||||||||| ||||| || ||||||||||| | |||||||||||    
T  45983554 cgacagggtaatgtcaattgtaacacctctttcacgttcagccttgagcttgtcaagcacccaagcatacttgaatgaacgcttgttcatct 45983463  T

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Target: chr1; HSP #7
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 196
Target Start/End: Complemental strand, 45993434 - 45993240
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| || || || ||||||||||| |||||||| |  ||||| |  ||||||||||| ||||||  ||||||| | |||||||| ||    
T  45993434 cacaatcagcttgggacgtcccggtgatcatgttcttaatgaaatccctgtgtccggaggcatcaatgacagtgcagctgtacttgtttgtctcaaactt 45993335  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    | |||| | | | ||||| || || |||||||||||||||| ||| ||||||||||| ||||| || ||||||||||| | |||| |||||||||    
T  45993334 cgacaaagaactgtcaattgtgatacctctttcacgctcagtcttgagcttgtcaagcacccaagcatacttgaatgaacgcttgatcatctcag 45993240  T

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Target: chr1; HSP #8
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 21 - 196
Target Start/End: Complemental strand, 7890967 - 7890792
Alignment:
Q  21 tccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatg 120  Q
    |||||| ||||||||||| |||||||| |  |||||||| ||||||||||  ||||||  | | ||||| |||||||| |||||||  | ||| |||||     
T  7890967 tccagtgatcatgttcttaatgaaatccctgtgtccaggggcatcaatgagagtgcagcggaagttggttgtctcaaacttccacagagaaatgtcaatt 7890868  T
Q  121 gtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    || || |||||||||||||| ||||| ||||||||||| ||||| || |||||||||||   | ||||||||||||    
T  7890867 gtgatacctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaatgcctgttcatctcag 7890792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 2 - 197
Target Start/End: Complemental strand, 38137802 - 38137607
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||| ||||| ||||| || || |||||||||||||| |||||||| |  ||||| || ||||||||||  ||||||||||||||||| |||||||| ||    
T  38137802 cacagtcagcttgggacgtcccggtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagtagtacttggtagtctcaaactt 38137703  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcagt 197  Q
      |||  | ||| ||||| || || |||||||||||||| ||||| |||||||| || ||||| || |||||||| ||   |||||| ||||||||    
T  38137702 tgacagagaaatgtcaatagtgatacctctttcacgctcggccttgagcttgtcgagcacccaagcatacttgaacgatggcttgtttatctcagt 38137607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 30 - 196
Target Start/End: Complemental strand, 40034612 - 40034448
Alignment:
Q  30 catgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattcct 129  Q
    ||||||||||||||||||    ||||| || || |||||||  ||||||| ||| ||||| |||||||| ||  |||  | ||||||||| ||||  |||    
T  40034612 catgttcttgatgaaatctg--tgtccgggggcgtcaatgagagtgcagtggtatttggttgtctcaaacttggacatggaaatatcaattgtaacacct 40034515  T
Q  130 ctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    ||||||||||||||||| ||||||||||| ||||| || ||||||||||| | ||||||||||||||    
T  40034514 ctttcacgctcagccttgagcttgtcaagtacccaagcatacttgaatgagcgcttgttcatctcag 40034448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 28 - 177
Target Start/End: Complemental strand, 7888695 - 7888546
Alignment:
Q  28 atcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattc 127  Q
    |||||||||||||||||||| |  ||||| || ||||||||||  |||||| ||||  |||| |||| ||| ||||| |  | ||| ||||| || || |    
T  7888695 atcatgttcttgatgaaatccctgtgtccgggggcatcaatgagagtgcagcagtagctggttgtctgaaacttccaaagagaaatgtcaattgtgatac 7888596  T
Q  128 ctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaat 177  Q
    ||||||||||||||||||| || |||||||| ||||| || |||||||||    
T  7888595 ctctttcacgctcagccttgagtttgtcaagcacccaagcatacttgaat 7888546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 28 - 197
Target Start/End: Original strand, 51291985 - 51292153
Alignment:
Q  28 atcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattc 127  Q
    ||||||||||| |||||||  | |||||| || ||||||||||  ||||| ||||||||| | || ||||| ||  | |  | ||| ||||| || || |    
T  51291985 atcatgttcttaatgaaattcccatgtccgggggcatcaatgagagtgcaatagtacttgattgt-tcaaacttggatagagaaatgtcaattgtgatac 51292083  T
Q  128 ctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcagt 197  Q
    ||||||||||||||||||| | ||||||||| ||||| || ||| ||||||| | | |||||||||||||    
T  51292084 ctctttcacgctcagccttgaacttgtcaagcacccaagcatacgtgaatgaacgcatgttcatctcagt 51292153  T

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Target: chr2 (Bit Score: 60; Significance: 8e-26; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 34691170 - 34691362
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||| ||||| |||||||| || || ||||||||||| |||||||| |  ||||| |||||||||||||  ||| || |||||||||| |||||||| ||    
T  34691170 cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt 34691269  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
     || |  | ||| ||||| || || ||||||||||||||||| || ||||||||||| ||||| || ||||||||||| | ||| ||||||||||    
T  34691270 gcata--gaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcag 34691362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 60; E-Value: 8e-26
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 34713582 - 34713774
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||| ||||| |||||||| || || ||||||||||| |||||||| |  ||||| |||||||||||||  ||| || |||||||||| |||||||| ||    
T  34713582 cacagtcagcttgggaggtcccggtgatcatgttcttaatgaaatccctgtgtccgggagcatcaatgagagtgaagcagtacttggttgtctcaaactt 34713681  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
     || |  | ||| ||||| || || ||||||||||||||||| || ||||||||||| ||||| || ||||||||||| | ||| ||||||||||    
T  34713682 gcata--gaaatgtcaattgtgatacctctttcacgctcagcgttgagcttgtcaagcacccaagcatacttgaatgaacgcttcttcatctcag 34713774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 52 - 196
Target Start/End: Original strand, 16232567 - 16232711
Alignment:
Q  52 tgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagct 151  Q
    ||||| || ||||||||||  |||||  |||||||||| |||||||| || ||||  | ||| ||||| || || |||||||||||||||||||| ||||    
T  16232567 tgtccgggggcatcaatgagggtgcaacagtacttggttgtctcaaacttgcacatggaaatgtcaattgtgatacctctttcacgctcagccttgagct 16232666  T
Q  152 tgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    ||||||| ||||| || ||||||||||| | | | ||||||||||    
T  16232667 tgtcaagcacccaagcatacttgaatgaacgcatcttcatctcag 16232711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 127 - 164
Target Start/End: Original strand, 33861304 - 33861341
Alignment:
Q  127 cctctttcacgctcagccttaagcttgtcaagaaccca 164  Q
    |||||||||||||||||||  |||||||||||||||||    
T  33861304 cctctttcacgctcagcctcgagcttgtcaagaaccca 33861341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 3e-25; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 196
Target Start/End: Original strand, 4620033 - 4620227
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||| ||||| ||||| ||||| || ||||||||||| |||||||| |  ||||| || ||||||||||  ||||||||||||||||| |||||||| ||    
T  4620033 cacagtcagcttgggatgttccggtgatcatgttcttaatgaaatctctgtgtccgggggcatcaatgagagtgcagtagtacttggttgtctcaaactt 4620132  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
      |||  | ||| || || || || |||||||||||||||||||| ||||||||||| ||||| || || |||||||| | | |||| |||||||    
T  4620133 ggacagagaaatgtcgattgtgatacctctttcacgctcagccttgagcttgtcaagcacccaagcatatttgaatgaacacatgtttatctcag 4620227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 28 - 196
Target Start/End: Original strand, 1846761 - 1846929
Alignment:
Q  28 atcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattc 127  Q
    ||||||||||| |||||||| |  ||||| || ||||||||||  ||||||  | | ||||| |||||||| ||||| |  | ||| ||||| || || |    
T  1846761 atcatgttcttaatgaaatccctgtgtccgggggcatcaatgagagtgcagaggaagttggttgtctcaaacttccatagagaaatgtcaattgtgatac 1846860  T
Q  128 ctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaatgacctcttgttcatctcag 196  Q
    ||||||||||||| ||||| ||||||||||| ||||| || ||||||||||| | | |||| |||||||    
T  1846861 ctctttcacgctcggccttgagcttgtcaagcacccaagcatacttgaatgaacgcctgtttatctcag 1846929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 179
Target Start/End: Complemental strand, 4787402 - 4787275
Alignment:
Q  52 tgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaatttccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagct 151  Q
    ||||| |||||||||||||| ||||||| ||||||| | |||||||| ||  |||  | ||| ||||| ||    ||||||||||||||| |||| || |    
T  4787402 tgtccgggagcatcaatgacagtgcagttgtacttgtttgtctcaaacttggacatagaaatgtcaattgtggcacctctttcacgctcacccttgagtt 4787303  T
Q  152 tgtcaagaacccatgcgtacttgaatga 179  Q
    ||||||| ||||| || |||||||||||    
T  4787302 tgtcaagcacccaagcatacttgaatga 4787275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 59; Significance: 3e-25; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 2 - 176
Target Start/End: Original strand, 16349482 - 16349656
Alignment:
Q  2 cacaatcagcctgggaggttccagtaatcatgttcttgatgaaatcacgatgtccaggagcatcaatgactgtgcagtagtacttggtggtctcaaattt 101  Q
    |||||||||| ||||| || ||||||||||||||||| |||||||| |  ||||| || ||||||||||  ||||||  ||||||||| |||||||| ||    
T  16349482 cacaatcagcttgggatgtcccagtaatcatgttcttaatgaaatccctgtgtccgggggcatcaatgatagtgcagcggtacttggttgtctcaaaatt 16349581  T
Q  102 ccacaatgcaatatcaatggtaattcctctttcacgctcagccttaagcttgtcaagaacccatgcgtacttgaa 176  Q
    | |||  | | | ||||| || || |||||||| ||||||||||| || |||||||||||||| || ||||||||    
T  16349582 caacatagaattgtcaattgtgatacctctttcgcgctcagccttgagtttgtcaagaacccacgcatacttgaa 16349656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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