View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_4 (Length: 518)
Name: NF9115_1D_low_4
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 242; Significance: 1e-134; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 231 - 495
Target Start/End: Complemental strand, 45678650 - 45678383
Alignment:
| Q |
231 |
acgtgcatgttctaatccttggagtatgttgcaattgattgattaagtggtcacagtggctacaaatctaaacgagtaatacttgcttgagcataaca-- |
328 |
Q |
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| T |
45678650 |
acgtgtatgttctgatccttggagtatgttgcaattgattgattaagtggtcacagtggctacaaatctaaacgagtaatacttgcttgagcataacagt |
45678551 |
T |
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| Q |
329 |
-ctaaatcatttgaaacatttacagtatatattgtcaaatgccaaatataattgtgatgatgatatatttcaaaaatacgagtttcactgggaagaggga |
427 |
Q |
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| T |
45678550 |
actaaatcatttgaaacatttacagtatatattgtcaaatgccaaatataatggtgatgatgatatatttcaaaaatacgagtttcactgggaagaggga |
45678451 |
T |
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| Q |
428 |
cagttttgtcaaaatagaaaataaaatgtacagttgtcacgtttgcatggagttttgtttctattatt |
495 |
Q |
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| T |
45678450 |
cagttttgtcaaaatagaaaataaaatgtacagttgtcacgtttgcatggagttttgtttctattatt |
45678383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 45678829 - 45678641
Alignment:
| Q |
22 |
aaaaatcagtattttgagctttttagtgtggccaagttaaggcagggaaatataatatttttcagaaaactgtacatacacgagcccaaatattacggat |
121 |
Q |
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| T |
45678829 |
aaaaatcagtattttgagctttttagtgtggccaagttaaggcagggaaatataatatttttcagcaaactgtacatacacgagcccaaatattacggat |
45678730 |
T |
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| Q |
122 |
caaagacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtggatgt |
210 |
Q |
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| T |
45678729 |
caaagacagactcgaaagagttatgttcatctgaatgggacaagtacaacaacgtaaataggatatatacgtacatatgacgtgtatgt |
45678641 |
T |
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