View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_5 (Length: 506)
Name: NF9115_1D_low_5
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 313; Significance: 1e-176; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 313; E-Value: 1e-176
Query Start/End: Original strand, 24 - 397
Target Start/End: Complemental strand, 3519080 - 3518712
Alignment:
| Q |
24 |
ataatatgtctgaactataaacctgatgttttagccgggaatttttctaccacaatgtgatcaaaatagcaaatgccaaaataatttgaaatgatgatga |
123 |
Q |
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| T |
3519080 |
ataatgtgtctgaactatatgcctgatgttttagccgggaatttttctaccacaatgtgatcaaagtagcaaatgccaaaataatttgaaatgatgatga |
3518981 |
T |
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| Q |
124 |
tcccgatagacatttataaatttgaagattaatcaattgaattggttgagtttcttaataacttaagatgcttgtccatgatagaccttatcgtagctca |
223 |
Q |
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| T |
3518980 |
tcccgatggacatttataaatttgaagattaatcaattgaattggttgagtttcttaata----aagatgcttgtccatgatagaccttatcgtagctca |
3518885 |
T |
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| Q |
224 |
tgaagtactgctcagttgcatggaattgttaagagtatagtgtacagaaaagttttcaaggaaggtatcctctgaccaacagggcctaggttggtcaaat |
323 |
Q |
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| T |
3518884 |
tgaactactgctcagttgcatggaattgtt-agagtatagtgtacagaaaagttttcaacgaaggtatcctctgaccaacagggcctagattggtcaaat |
3518786 |
T |
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| Q |
324 |
tattgatttcgacatgggggatgatctccatagtcctctccaagattggaggagggcagcccaaataataggca |
397 |
Q |
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| T |
3518785 |
tattgatttcgacatgagggatgatctccatagtcctctccaagattggaggagggcagcccaaataataggca |
3518712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 449 - 506
Target Start/End: Complemental strand, 3518706 - 3518649
Alignment:
| Q |
449 |
gtccccggtgccaaccgccaagttagactggccaactaattcttttatccaccttgag |
506 |
Q |
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| T |
3518706 |
gtccccggtgccaaccgccaagttagactggccaactaattcttttatccaccttgag |
3518649 |
T |
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