View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_7 (Length: 442)
Name: NF9115_1D_low_7
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_7 |
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Alignment Details
Target: chr1 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 178 - 431
Target Start/End: Original strand, 30528493 - 30528746
Alignment:
| Q |
178 |
cataagctttagattattacattttgcatacctatatgcatggttgtgaaactcaaaaccgacacaagtaaaacagatcctgatcaacttcaaaccataa |
277 |
Q |
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| T |
30528493 |
cataagctttagattattacattttgcatacctatatgcatggttgtgaaactcaaaaccgacacaagtaaaacagatcctgatcaacttcaaaccataa |
30528592 |
T |
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| Q |
278 |
agaatgagtgaaagtttccaaaagagagtgatttaagaattcaaaacattgtaacagaaactgttcatcctcattcttcacttcatttcattattttttc |
377 |
Q |
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| T |
30528593 |
agaatgagtgaaagtttccaaaagagagtgatttaagaattcaaaacattgtaacagaaactgttcatcctcattcttcacttcatttcattattttttc |
30528692 |
T |
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| Q |
378 |
caacaaagttgtctgtaaaagcctgagagaaaggaaagaagagggtccaacaac |
431 |
Q |
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| T |
30528693 |
caacaaagttgtctgtaaaagcctgagagaaaggaaagaagagggtccaacaac |
30528746 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 7 - 105
Target Start/End: Original strand, 30528322 - 30528420
Alignment:
| Q |
7 |
tataacacccaagttttccacagaaaacccagaaacagcccaacaaaaagttcagatttttagtataaatgatagaagaaaatgaatggatccacctat |
105 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30528322 |
tataacacccaagttttccacagaaaacccagaaacagcccaacaaaaagttcaaatttttagtataaatgatagaagaaaatgaatggatccacctat |
30528420 |
T |
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