View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_1D_low_8 (Length: 400)
Name: NF9115_1D_low_8
Description: NF9115_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_1D_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 7 - 329
Target Start/End: Complemental strand, 26916935 - 26916634
Alignment:
| Q |
7 |
atatgaaggacgtgaagaaataaaataaattggtaatattcaccaacaaacttttatgaaaattcatcttaacgttagaaaccacctcaaaatgcataag |
106 |
Q |
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| T |
26916935 |
atatgaaggacgtgaagaaataaaataaattggtaatattcaccaacaaacttttatgaaaattcatcttaacgttagaaaccacctcaaaat------- |
26916843 |
T |
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| Q |
107 |
gattttcttaatagctctaatttttgcccaacttctcacccatgatgaaaatattattaaccaacccgaaaaccctagnnnnnnntcccaaactcacaaa |
206 |
Q |
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| T |
26916842 |
--------------ctctaatttttgcccaacttctcacccatgatgaaaatattattaaccaacccgaaaacccctagaaaaaatcccaaactcacaaa |
26916757 |
T |
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| Q |
207 |
ttctaaacatagaatgcaaaccttcaagaacgaagaaaaaaggacggacatcatgaccggggttcaaatcccggcacttccacgtgtatgagtttataat |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| | ||||||||| |||||||||||||||| |
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| T |
26916756 |
ttctaaacatagaatgcaaaccttcaagaacgaagaaaaaaggacggacatcatgatcggggttcaaatcctgtcacttccacatgtatgagtttataat |
26916657 |
T |
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| Q |
307 |
gattttatcatctcatctatcta |
329 |
Q |
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| T |
26916656 |
gattttatcatctcgtctatcta |
26916634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 290 - 331
Target Start/End: Complemental strand, 27845154 - 27845113
Alignment:
| Q |
290 |
gtgtatgagtttataatgattttatcatctcatctatctacc |
331 |
Q |
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| T |
27845154 |
gtgtgtgagtttataatggttttatcatctcgtctatctacc |
27845113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 331
Target Start/End: Original strand, 54086100 - 54086140
Alignment:
| Q |
291 |
tgtatgagtttataatgattttatcatctcatctatctacc |
331 |
Q |
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| T |
54086100 |
tgtatgagtttataatgattttgtcatttcatctatctacc |
54086140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 331
Target Start/End: Complemental strand, 2228157 - 2228079
Alignment:
| Q |
257 |
tcatgaccggggttcaaatcccggcacttccacgtgta----tgagtttataatgattttatcatctcatctatctacc |
331 |
Q |
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| T |
2228157 |
tcatgaccggggttcgaatcccggtacctccacttgtatgtgtgagtttataatgactttgtcatttcgtctatctacc |
2228079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 257 - 331
Target Start/End: Original strand, 27856048 - 27856126
Alignment:
| Q |
257 |
tcatgaccggggttcaaatcccggcacttccac----gtgtatgagtttataatgattttatcatctcatctatctacc |
331 |
Q |
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| T |
27856048 |
tcatgatcggggttcgaatcccggtacttccacttgtgtgtgtgagtttataatgactttttcatttcgtctatctacc |
27856126 |
T |
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