View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_high_18 (Length: 222)
Name: NF9115_2D_high_18
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_high_18 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 5e-52; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 52 - 172
Target Start/End: Complemental strand, 32694473 - 32694357
Alignment:
| Q |
52 |
taaaaattaagagtgtgtggttaattaattaccagatcatgctggcagcttcagcctctcaaaccaacataacatatatacatacttgtgaatgaatgaa |
151 |
Q |
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| T |
32694473 |
taaaaattaagagtgtgtggttaattaattaccagatcatgctggcagcttcagcctctcaaaccaacataac----atacatacttgtgaatgaatgaa |
32694378 |
T |
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| Q |
152 |
gaaacattcatgatgatagat |
172 |
Q |
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| T |
32694377 |
gaaacattcatgatgatagat |
32694357 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 3 - 58
Target Start/End: Complemental strand, 32694552 - 32694497
Alignment:
| Q |
3 |
aataacaatttgattcatatataaatcgaatattaaaaatatacaagattaaaaat |
58 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32694552 |
aataacaatttgattcatatataaatcgaatattaaaaatatacaagattaaaaat |
32694497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 166 - 207
Target Start/End: Complemental strand, 32694333 - 32694292
Alignment:
| Q |
166 |
gatagatagatatatagatgcagacgtagaaattgacaaaaa |
207 |
Q |
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| T |
32694333 |
gatagatagatatatagatgcagacgtagaaattgacaaaaa |
32694292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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