View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF9115_2D_high_20 (Length: 215)
Name: NF9115_2D_high_20
Description: NF9115_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF9115_2D_high_20 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 125; Significance: 1e-64; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 87 - 215
Target Start/End: Original strand, 13228178 - 13228306
Alignment:
| Q |
87 |
attgtgggggattggtataggagagaaagtgattttctgtttttattttcaatggaatttcaaagtgttatttgtcctagctaatttgtcatgactcttg |
186 |
Q |
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| T |
13228178 |
attgtgggggattggtataggagagaaagtgattttctgtttttattttcaatggaatttcaaagtcttatttgtcctagctaatttgtcatgactcttg |
13228277 |
T |
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| Q |
187 |
tttcataatgtttatatattaagaagtgt |
215 |
Q |
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| T |
13228278 |
tttcataatgtttatatattaagaagtgt |
13228306 |
T |
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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 13228109 - 13228138
Alignment:
| Q |
18 |
agtttaatatgtttataagattgagatggg |
47 |
Q |
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| T |
13228109 |
agtttaatatgtttataagattgagatggg |
13228138 |
T |
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